kakaobrain / solventLinks
☆72Updated last year
Alternatives and similar repositories for solvent
Users that are interested in solvent are comparing it to the libraries listed below
Sorting:
- Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …☆51Updated last year
- Implementation of Denoising Diffusion for protein design, but using the new Equiformer (successor to SE3 Transformers) with some addition…☆56Updated 2 years ago
- Protein Design with Guided Discrete Diffusion☆136Updated last year
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆83Updated 4 years ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆112Updated 4 years ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 3 years ago
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆158Updated 2 years ago
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models☆38Updated 11 months ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆98Updated 2 years ago
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆125Updated 2 years ago
- Protein structure datasets for machine learning.☆112Updated 6 months ago
- In-silico design pipeline for evaluating protein structure diffusion models.☆27Updated last year
- Created a RNN with LSTM cells to learn patterns from SMILES Strings, and use them to generate new molecular structures.☆18Updated 6 years ago
- A Modular Architecture for Deep Learning Systems☆46Updated 5 months ago
- A list of manuscripts/tools using diffusion on biological enttieis☆97Updated 2 years ago
- ☆57Updated last year
- ☆13Updated 2 years ago
- Official Pytorch implementation of PLUS (Protein sequence representations Learned Using Structural information), IEEE Access 2021☆41Updated 2 years ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆80Updated 3 weeks ago
- BARTSmiles, generative masked language model for molecular representations☆34Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 5 months ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆177Updated 2 years ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆73Updated 2 years ago
- Official implementation of "Learning the language of protein structures"☆39Updated 4 months ago
- Learning Neural Generative Dynamics for Molecular Conformation Generation (ICLR 2021)☆22Updated 4 years ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆54Updated last year
- ☆40Updated 3 weeks ago
- Awesome papers related to generative flow matching and its applications in bioinformatics.☆30Updated last month
- Synthesizable 3D Molecule Generation via Joint Reaction and Coordinate Modeling☆16Updated 3 months ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆57Updated last year