☆74Mar 7, 2024Updated 2 years ago
Alternatives and similar repositories for solvent
Users that are interested in solvent are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for MD methods and analysis from submitted or published work☆20Jun 10, 2023Updated 3 years ago
- Demo of diffusion models #DDPM applied to molecular dynamics of small peptide☆14Jan 26, 2024Updated 2 years ago
- ☆213Apr 21, 2025Updated last year
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆544Mar 22, 2026Updated 5 months ago
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆26Mar 21, 2024Updated 2 years ago
- Denoising diffusion probabilistic models for replica exchange☆24Feb 19, 2022Updated 4 years ago
- ☆15Apr 7, 2022Updated 4 years ago
- Adapting protein language models for structure-conditioned design☆42Aug 5, 2024Updated 2 years ago
- mirror of https://zhanglab.ccmb.med.umich.edu/EDTSurf/☆10Jun 20, 2023Updated 3 years ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Apr 6, 2023Updated 3 years ago
- ☆31Dec 12, 2024Updated last year
- Screen interactions with AlphaFold Multimer☆15Mar 10, 2025Updated last year
- ☆27Dec 6, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.☆12Dec 10, 2024Updated last year
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 4 months ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆18Sep 10, 2024Updated last year
- Metadiffusion implemented in Boltz-2☆24Feb 23, 2026Updated 6 months ago
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆30Jun 21, 2023Updated 3 years ago
- Generative backmapping of coarse-grained molecular systems using an equivariant graph neural network and flow-matching☆12Sep 17, 2025Updated 11 months ago
- ☆17Oct 30, 2023Updated 2 years ago
- Flow-matching for coarse graining of miniproteins.☆20Nov 18, 2022Updated 3 years ago
- A geometric deep learning method for refining and assessing protein complex structures.☆16Oct 22, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆31Oct 20, 2023Updated 2 years ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆19Feb 8, 2024Updated 2 years ago
- Code for RL-DIF☆16Jun 24, 2025Updated last year
- Dataset with quantitative binding scores of scFv-format antibodies against SARS-CoV-2 target peptide☆29Mar 30, 2023Updated 3 years ago
- Protein 3D Structure Prediction with DeepFold☆19Aug 26, 2024Updated 2 years ago
- Colorblind-friendly, perceptually uniform palettes for pymol☆21Jan 25, 2021Updated 5 years ago
- ☆45Apr 12, 2024Updated 2 years ago
- A conditionally adapted protein language model for the generation of enzymes☆24Nov 26, 2024Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆66May 21, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆281Feb 14, 2024Updated 2 years ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆38Nov 7, 2024Updated last year
- Inference code for Bio-Inspired Antibody Language Model☆26Aug 26, 2024Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆239Aug 27, 2025Updated last year
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆60Apr 13, 2026Updated 4 months ago
- Fast protein backbone generation with SE(3) flow matching.☆330Jul 19, 2024Updated 2 years ago
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆336Oct 6, 2025Updated 10 months ago