tiwarylab / DDPM_REMDLinks
Denoising diffusion probabilistic models for replica exchange
☆25Updated 3 years ago
Alternatives and similar repositories for DDPM_REMD
Users that are interested in DDPM_REMD are comparing it to the libraries listed below
Sorting:
- Supporting data for the manuscript "Deep learning the slow modes for rare events sampling"☆21Updated last year
- DiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces☆20Updated 8 months ago
- Geometric super-resolution for molecular geometries☆42Updated 3 years ago
- Tutorials and data necessary to reproduce the results of publication Machine Learning Coarse-Grained Potentials of Protein Thermodynamics☆91Updated last year
- Flow-matching for coarse graining of miniproteins.☆19Updated 3 years ago
- ☆27Updated last year
- Timewarp is a research project using deep learning to accelerate molecular dynamics simulation.☆59Updated last year
- ☆15Updated last year
- ☆15Updated 3 years ago
- Projecting Molecules into Synthesizable Chemical Spaces (ICML 2024)☆58Updated last week
- An E(3) Equivariant Variational Autoencoder for Molecular Linker Design☆51Updated 3 years ago
- Generative backmapping of coarse-grained molecular systems using an equivariant graph neural network and flow-matching☆10Updated 4 months ago
- Message Passing Neural Networks for Molecule Property Prediction☆49Updated 3 years ago
- Pose checks for 3D Structure-based Drug Design methods☆93Updated last year
- G-SchNet extension for SchNetPack☆63Updated 2 months ago
- cG-SchNet - a conditional generative neural network for 3d molecular structures☆65Updated 2 years ago
- Implementation of "Denoise Pretraining on Non-equilibrium Molecular Conformations for Accurate and Transferable Neural Potentials" in PyT…☆14Updated 2 years ago
- A GFlowNet with a chemical synthesis action space.☆114Updated last year
- Implementation of Differentiable Molecular Simulations with torchMD.☆16Updated 2 years ago
- [TMLR 2023] Training and simulating MD with ML force fields☆115Updated last year
- Diffusion model for transition state prediction☆46Updated 2 years ago
- ☆73Updated 2 years ago
- A Benchmarking Platform for Realistic And Practical Inverse Molecular Design☆78Updated 8 months ago
- Learning Molecular Dynamics with Simple Language Model built upon Long Short-Term Memory Neural Network☆44Updated 3 years ago
- Force Fields☆66Updated last year
- Example to fit parameters and run CG simulations using TorchMD and Schnet☆47Updated 3 years ago
- Convert coarse-grained protein structure to all-atom model☆48Updated 7 months ago
- The official repository of Uni-pKa☆92Updated 10 months ago
- A framework for training energy-based diffusion models for sampling and energy estimation.☆88Updated 2 months ago
- Bayesian Multistate Bennett Acceptance Ratio Method☆16Updated 3 months ago