PerkLab / SlicerFreeSurferLinks
This repository contains the SlicerFreeSurferImporter extension for 3D Slicer. The extension implements a module for importing models, scalar overlays, and segmentations from FreeSurfer, as well as handling the transformation of models from FreeSurfer to Slicer coordinates.
☆17Updated 3 weeks ago
Alternatives and similar repositories for SlicerFreeSurfer
Users that are interested in SlicerFreeSurfer are comparing it to the libraries listed below
Sorting:
- Utilities for reading and writing files created by 3D Slicer☆40Updated 5 months ago
- Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.☆82Updated 4 months ago
- A single NIfTI image saved with all 48 spatial rotation permutations☆29Updated 4 years ago
- An open-source, free comprehensive software that will allow biomedical scientists to precisely locate shape changes in their imaging stud…☆61Updated 3 weeks ago
- Open source software for medical image processing from the Empenn team☆40Updated 2 months ago
- Extension to import microCT data and conduct 3D morphometrics in Slicer☆107Updated last week
- A Medical Imaging Quality Assurance tool☆35Updated last year
- 3D Slicer module for TorchIO.☆23Updated last year
- Version 2 of the minc-toolkit, uses tools based on ITK version 4.x☆53Updated last month
- Open-source part of the medInria software☆99Updated last month
- MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit☆94Updated 10 months ago
- Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the Universit…☆114Updated last year
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vessels…☆45Updated last year
- Tools to automate simple manipulations and measurements of medical images and segmentations in nifti format.☆21Updated last month
- The Medical Image Segmentation Tool Set (iSEG) is a fully integrated segmentation (including pre- and postprocessing) toolbox for the eff…☆50Updated 2 years ago
- Segmentation-based measurements with DICOM import and export of the results.☆25Updated last month
- Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space☆50Updated 2 years ago
- MatlabBridge extension for 3D Slicer☆19Updated last year
- Basic minc-tools from former minc repository☆31Updated 7 months ago
- AssemblyNet: 3D Whole Brain MRI segmentation pipeline☆61Updated 2 years ago
- Python utilities for medical image and surface-based analysis☆31Updated last week
- Slicer extensions index☆74Updated last week
- An open-source CMake-based project that provides macros and associated tools for the easy building of 3D Slicer command line interface (C…☆38Updated 5 months ago
- Using ANTs to process multiple MR image types for a single subject☆25Updated 7 years ago
- DCE MRI analysis in Julia☆39Updated 3 years ago
- standalone Brain Extraction Tool (bet2), released by☆19Updated 9 years ago
- Collection of utilities that are not polished implementations but can be useful to users☆85Updated last week
- A project to provide custom sorting and renaming of dicom files☆78Updated 2 months ago
- Very fast greedy diffeomorphic registration code☆80Updated 2 months ago
- This is a tool to quickly preview nifti images on the terminal☆63Updated 5 months ago