This repository contains the SlicerFreeSurferImporter extension for 3D Slicer. The extension implements a module for importing models, scalar overlays, and segmentations from FreeSurfer, as well as handling the transformation of models from FreeSurfer to Slicer coordinates.
☆18Jul 23, 2026Updated 3 months ago
Alternatives and similar repositories for SlicerFreeSurfer
Users that are interested in SlicerFreeSurfer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NeuroSegmentation extension for 3D Slicer☆18Apr 23, 2024Updated 2 years ago
- Utility extension for 3D Slicer, containing tools and algorithms for building image guided surgery applications☆17Sep 28, 2026Updated last month
- Quickshear Defacing for Neuroimages☆14May 16, 2023Updated 3 years ago
- A python module designed to reduce your brain load while accessing FreeSurfer brain surface and morphometry data files of single subjects…☆10Oct 11, 2026Updated 2 weeks ago
- 3D Slicer module for TorchIO.☆25May 2, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Simple Scripted Module to batch process patients in 3D Slicer☆18Jun 26, 2025Updated last year
- 3D Slicer extension for exporting Slicer scenes to use in the OpenAnatomy.org browser☆31Oct 8, 2025Updated last year
- fMRI Real-Time Processing System in python☆10Nov 21, 2025Updated 11 months ago
- A new tool for harmonizing volumetric MRI data from unseen scanners (Garcia-Dias et al. 2020)☆18Jan 6, 2023Updated 3 years ago
- CNN for segmenting vasculature☆19Apr 9, 2026Updated 6 months ago
- Most of the test files used with pydicom, downloaded to cache when needed☆11Sep 14, 2025Updated last year
- This is the documentation repository for ongoing releases to the NDA collection 3165. Please add GitHub Issues here for requests or feed…☆17Oct 15, 2025Updated last year
- Helper to aid de-identification of MRI images (3D or 4D)☆10Jun 13, 2024Updated 2 years ago
- Modules supporting image-guided interventions in 3D Slicer.☆117Sep 28, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Neuroimaging community skills repo - making LLMs leverage neuroimaging tools more effectively☆16Oct 15, 2026Updated 2 weeks ago
- This module contains classes that bridge ITK image processing and VTK visualization pipelines.☆15Jun 27, 2025Updated last year
- CortPro: Your cortical profiling toolbox☆24Aug 6, 2026Updated 2 months ago
- Code for "Boosted Generative Models", AAAI 2018.☆20Dec 26, 2017Updated 8 years ago
- ☆12Oct 17, 2019Updated 7 years ago
- [MICCAI 2024] Weakly Supervised Learning of Cortical Surface Reconstruction from Segmentations☆12Oct 17, 2024Updated 2 years ago
- orthogonal projective non-negative matrix factorization☆12Nov 19, 2024Updated last year
- PNH segmentation pipelines based on nipype☆24Oct 19, 2026Updated last week
- a BIDS app for pseudo-anonymization of neuroimaging data☆56Oct 24, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This extension contains only a module with some tools to install PyTorch inside Slicer, using the best possible version.☆40Jul 30, 2026Updated 2 months ago
- 3D Slicer module for pedicle screw insertion training☆21Jun 11, 2021Updated 5 years ago
- NIfTI volume rendering using WebGL☆48Dec 28, 2022Updated 3 years ago
- Matlab package for circle packing☆19Aug 19, 2026Updated 2 months ago
- OpenNeuro dataset - ChineseEEG: A Chinese Linguistic Corpora EEG Dataset for Semantic Alignment and Neural Decoding☆15Mar 8, 2025Updated last year
- An (working) example of cSVD based (head) CT perfusion map generator in Python.☆11Sep 12, 2022Updated 4 years ago
- Real-time tractogram computer and visualizer☆16Dec 21, 2022Updated 3 years ago
- A volumetric version of the HCP-MMP1 atlas conveniently imported in FSL. Please consider citing "Bedini, M., Olivetti, E., Avesani, P., &…☆32Oct 2, 2026Updated 3 weeks ago
- Label Augmented Modality Agnostic Registration (LAMAReg) is a MRI resgistration technique combines deep learning-based segmentation and n…☆14Sep 30, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15Dec 1, 2023Updated 2 years ago
- ☆20Oct 17, 2024Updated 2 years ago
- AI-enabled Mouse Organ Segmentation☆15Jan 26, 2021Updated 5 years ago
- Slicer extensions index☆90Oct 21, 2026Updated last week
- BrainSuite's structural, diffusion, and functional MRI processing pipelines with QC functionalities.☆17Oct 5, 2026Updated 3 weeks ago
- PREEMACS. pipeline for PREprocessing and Extraction of the MACaque brain Surface☆18Sep 30, 2026Updated 3 weeks ago
- Petalisp for Python - a replacement for Numpy.☆13Mar 26, 2019Updated 7 years ago