PerkLab / SlicerFreeSurfer
This repository contains the SlicerFreeSurferImporter extension for 3D Slicer. The extension implements a module for importing models, scalar overlays, and segmentations from FreeSurfer, as well as handling the transformation of models from FreeSurfer to Slicer coordinates.
☆13Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for SlicerFreeSurfer
- Utilities for reading and writing files created by 3D Slicer☆34Updated last month
- An open-source CMake-based project that provides macros and associated tools for the easy building of 3D Slicer command line interface (C…☆33Updated 4 months ago
- Version 2 of the minc-toolkit, uses tools based on ITK version 4.x☆49Updated last month
- An image analysis workflow for open and reproducible research on femoral knee cartilage☆32Updated 4 months ago
- Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.☆76Updated 3 months ago
- NeuroSegmentation extension for 3D Slicer☆13Updated 6 months ago
- MatlabBridge extension for 3D Slicer☆17Updated 6 months ago
- MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit☆79Updated 2 months ago
- The Image-based Vascular Analysis Toolkit☆22Updated 10 years ago
- The Medical Image Segmentation Tool Set (iSEG) is a fully integrated segmentation (including pre- and postprocessing) toolbox for the eff…☆45Updated last year
- A Medical Imaging Quality Assurance tool☆32Updated 4 months ago
- Very fast greedy diffeomorphic registration code☆66Updated last month
- 3D Slicer module for TorchIO.☆20Updated 6 months ago
- Yeah, I'm pretty confident about all this.☆11Updated 3 years ago
- Tools to automate simple manipulations and measurements of medical images and segmentations in nifti format.☆21Updated 4 months ago
- Collection of utilities that are not polished implementations but can be useful to users☆69Updated 2 weeks ago
- Segmentation-based measurements with DICOM import and export of the results.☆23Updated 2 months ago
- An open-source, free comprehensive software that will allow biomedical scientists to precisely locate shape changes in their imaging stud…☆57Updated this week
- Cookbook examples for the Insight Toolkit documented with Sphinx☆55Updated this week
- DCE MRI analysis in Julia☆37Updated 3 years ago
- dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC☆15Updated last month
- Open-source part of the medInria software☆92Updated 3 weeks ago
- Library for polymorph segmentation representation for medical image computing☆20Updated last year
- Slicer extensions index☆65Updated last week
- Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space☆49Updated 2 years ago
- Website for NA-MIC Project Weeks☆84Updated this week
- A project to provide custom sorting and renaming of dicom files☆74Updated 4 months ago
- This extension makes available Elastix medical image registration toolkit (http://elastix.isi.uu.nl/) available in Slicer.☆49Updated this week
- Many additional segmentation tools for 3D Slicer's Segment Editor☆43Updated 6 months ago
- Extension to import microCT data and conduct 3D morphometrics in Slicer☆95Updated 3 weeks ago