neurodata / ardent
Affine and Regularized DEformative Numeric Transform (ardent) is a Python package for performing image registration using LDDMM.
☆15Updated 4 years ago
Alternatives and similar repositories for ardent:
Users that are interested in ardent are comparing it to the libraries listed below
- NeuroData's package for exploring and using progressive learning algorithms☆36Updated 3 months ago
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Updated 6 years ago
- CloudReg☆11Updated 10 months ago
- Method container for computational neuroscience on brains.☆28Updated 2 months ago
- Block-wise task scheduling for large nD volumes.☆29Updated 3 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆46Updated this week
- 2D image registration in python, using napari.☆16Updated 3 years ago
- Confound-isolating cross-validation approach to control for a confounding effect in a predictive model.☆39Updated 5 years ago
- A library to facilitate machine learning on multi-dimensional images.☆81Updated 2 months ago
- Efficient cell detection in large images using cellfinder in napari☆23Updated last year
- Homepage for NeuroData☆12Updated last week
- Image mapping using the LDDMM algorithm, implemented in tensorflow☆16Updated 3 years ago
- A system for building mouse brain atlas from histology series☆11Updated 4 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 3 months ago
- Neuroimaging widgets for jupyter notebooks☆85Updated 2 years ago
- Developing a Brain Atlas through Deep Learning☆51Updated last year
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 3 years ago
- Course materials for the 2018 Summer Workshop on the Dynamic Brain☆22Updated 6 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆52Updated 4 years ago
- Medical image analysis framework merging ANTsR and deep learning☆63Updated this week
- Conquering confounds and covariates: methods, library and guidance☆37Updated 11 months ago
- Connecting Java/ImgLib2 + Python/NumPy☆30Updated 3 weeks ago
- Process images using SimpleITK in napari☆20Updated 4 months ago
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆20Updated 3 months ago
- website for the napari image viewer☆44Updated this week
- ☆37Updated 6 months ago
- Python module for generating Bland-Altman plots☆34Updated last year
- DataLad extension for neuroimaging research☆17Updated 2 months ago
- BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome☆10Updated 2 years ago
- ☆19Updated 6 years ago