Alternatives and similar repositories for SlicerMONAIViz

Users that are interested in SlicerMONAIViz are comparing it to the libraries listed below

• GSTT-CSC / TotalSegmentator-AIDE
  TotalSegmentator packaged as an AIDE Application, based on the MONAI Application Package (MAP) standard.
  ☆31Updated last year
• UMEssen / SALT
  Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hiera…
  ☆81Updated last year
• hhaentze / MRSegmentator
  ☆144Updated 4 months ago
• MIC-DKFZ / BodyPartRegression
  ☆77Updated 3 months ago
• mist-medical / MIST
  MIST: A simple and scalable end-to-end framework for 3D medical imaging segmentation.
  ☆52Updated 3 months ago
• MHubAI / models
  Stores the MHub models dockerfiles and scripts.
  ☆10Updated 7 months ago
• bhklab / med-imagetools
  Transparent and reproducible medical image processing pipelines in Python.
  ☆54Updated this week
• StanfordMIMI / Comp2Comp
  Computed tomography to body composition (Comp2Comp).
  ☆100Updated 2 weeks ago
• MIC-DKFZ / segmentation_failures_benchmark
  ☆15Updated 9 months ago
• UMEssen / saros-dataset
  Sparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imag…
  ☆62Updated 10 months ago
• razorx89 / pydicom-seg
  Python package for DICOM-SEG medical segmentation file reading and writing
  ☆85Updated 2 years ago
• DIAGNijmegen / picai_prep
  Preprocessing 3D medical images and image archives —geared towards prostate cancer detection in MRI.
  ☆25Updated 8 months ago
• primakov / precision-medicine-toolbox
  Precision medicine toolbox
  ☆70Updated last year
• DIAGNijmegen / picai_baseline
  Baseline AI models for 3D csPCa detection/diagnosis in bpMRI
  ☆55Updated 10 months ago
• neuronflow / BraTS-Toolkit
  Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.
  ☆95Updated 2 months ago
• rachellea / ct-volume-preprocessing
  End-to-end Python CT volume preprocessing pipeline to convert raw DICOMs into clean 3D numpy arrays for ML. From paper Draelos et al. "Ma…
  ☆73Updated 5 years ago
• CCI-Bonn / HD-SEQ-ID
  HD-SEQ-ID: HD Sequence Identifier for brain MRI
  ☆16Updated last year
• Sllambias / yucca
  ☆26Updated last week
• fepegar / SlicerPyTorch
  This extension contains only a module with some tools to install PyTorch inside Slicer, using the best possible version.
  ☆36Updated 6 months ago
• mazurowski-lab / mri_foundation
  ☆66Updated 2 months ago
• mazurowski-lab / SegmentAnyBone
  SegmentAnyBone: A Universal Model that Segments Any Bone at Any Location on MRI
  ☆114Updated 11 months ago
• MIC-DKFZ / LesionLocator
  LesionLocator is a framework for zero-shot lesion segmentation and longitudinal tumor tracking in 3D full-body imaging.
  ☆76Updated 2 months ago
• Novestars / Neural_Pre_Processing
  Neural Pre Processing is an end-to-end weakly supervised learning approach for converting raw head MRI images to intensity-normalized, sk…
  ☆30Updated last year
• MIC-DKFZ / nnssl
  ☆118Updated 2 months ago
• DIAGNijmegen / picai_labels
  Annotations for the PI-CAI Challenge: Public Training and Development Dataset
  ☆66Updated 5 months ago
• raidionics / Raidionics
  Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumes
  ☆43Updated 4 months ago
• rcuocolo / PROSTATEx_masks
  Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.
  ☆88Updated 3 years ago
• dalcalab / voxel
  Torch utilities for 3D medical imaging
  ☆51Updated last month
• mazurowski-lab / SlicerSegmentWithSAM
  3D Slicer extension for Segment Anything Model (SAM) developed by Meta
  ☆68Updated 6 months ago
• andreped / livermask
  💥 Command line tool for automatic liver parenchyma and liver vessel segmentation in CT using a pretrained deep learning model
  ☆70Updated last year