Documentation and tutorials on using AWS for biomedical research
☆18May 3, 2025Updated 10 months ago
Alternatives and similar repositories for NIHCloudLabAWS
Users that are interested in NIHCloudLabAWS are comparing it to the libraries listed below
Sorting:
- Documentation and tutorials on using GCP for biomedical research☆35Mar 12, 2026Updated last week
- A software toolkit for the interconversion of standard data models for phenotypic data☆15Mar 13, 2026Updated last week
- Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NI…☆88Jun 6, 2025Updated 9 months ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆36Jul 10, 2024Updated last year
- deploy a snakemake pipeline directly from version control (under development)☆25Mar 12, 2026Updated last week
- Code for the Recount project☆11Dec 13, 2024Updated last year
- Clinical Whole Genome and Exome Sequencing Pipeline☆30Oct 27, 2025Updated 4 months ago
- hail-based pipelines for annotating variant callsets and exporting them to elasticsearch☆23Updated this week
- ☆13May 27, 2025Updated 9 months ago
- This repo contains the knitr code for the paper: Gillespie, C. S., et al, 2010. Analysing yeast time course microarray data using BioCond…☆13Jan 25, 2016Updated 10 years ago
- Repository for the family history/pedigree project☆13Feb 24, 2026Updated 3 weeks ago
- Sandbox for playing with Neo4J and graph approaches to NLP☆12Jul 12, 2017Updated 8 years ago
- LinuxForHealth Data Flows☆26Jun 8, 2022Updated 3 years ago
- A library for GNU make to schedule rules as jobs with qsub or sbatch☆11Mar 7, 2013Updated 13 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆22Sep 14, 2025Updated 6 months ago
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 5 years ago
- structural heterogeneity analysis for cryo-ET subtomogram☆10Feb 23, 2026Updated 3 weeks ago
- Example of using JupyterHub with JupyterLab RTC☆11Dec 17, 2021Updated 4 years ago
- Gene expression viewer template☆11Aug 30, 2017Updated 8 years ago
- Python text classification package with a focus on medical text.☆17Jun 28, 2021Updated 4 years ago
- ☆26May 16, 2025Updated 10 months ago
- Code for Dligach and Miller 2018 paper Learning Patient Representations from Text☆10Apr 2, 2023Updated 2 years ago
- A python toolkit for building and querying multi-string BWTs☆27Mar 2, 2017Updated 9 years ago
- 🥞 Zero-to-JupyterHub with Kubernetes using an opinionated tech stack☆12Aug 12, 2019Updated 6 years ago
- tools to analyze a collection of texts and identify relevant words☆12May 20, 2018Updated 7 years ago
- Standalone shiny server container for viewing CellChat object☆13Feb 18, 2021Updated 5 years ago
- Impute to 1000 genomes efficiently by distributing to SGE, including alignment of target to reference, haplotyping, imputing, converting …☆14May 28, 2014Updated 11 years ago
- ImgLib2 integration for ClearVolume☆12Feb 17, 2025Updated last year
- An Interactive Tool for Natural Language Processing on Clinical Text☆15Aug 20, 2021Updated 4 years ago
- ☆10Mar 4, 2025Updated last year
- automated on-the-fly tilt-series alignment☆11Jul 6, 2021Updated 4 years ago
- SerialEM mdoc files as pandas dataframes☆14Feb 4, 2026Updated last month
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- Lecture notes/book in progress on computing for conservation genomics☆39Jan 29, 2024Updated 2 years ago
- IMOD model files as pandas dataframes in Python☆12Jun 26, 2025Updated 8 months ago
- Two-Dimensional Template Matching implemented in Python☆14Mar 6, 2026Updated 2 weeks ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Jun 29, 2020Updated 5 years ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 8 years ago
- R Package for phasing of single cell Strand-seq data☆10Jan 14, 2025Updated last year