STRIDES / NIHCloudLabAWSLinks
Documentation and tutorials on using AWS for biomedical research
☆18Updated 6 months ago
Alternatives and similar repositories for NIHCloudLabAWS
Users that are interested in NIHCloudLabAWS are comparing it to the libraries listed below
Sorting:
- Bioinformatics for Benched Biologists☆22Updated 5 years ago
- script + metadata = standalone component☆43Updated last month
- An Easy to Use Analysis System for All Human Public bulk RNAseq Data!☆18Updated 2 years ago
- Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…☆38Updated 8 months ago
- The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.☆35Updated last year
- A server for maintaining high-throughput sequencing QC data☆13Updated 3 months ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆13Updated this week
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆45Updated last month
- Bioinformatics algorithms: Needleman-Wunsch, Feng-Doolittle, Gotoh and Nussinov implemented in Python☆18Updated 8 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- Visual exploratory analysis of gene expression data☆43Updated 2 months ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated last week
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 6 years ago
- iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data☆24Updated 6 years ago
- Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.☆36Updated this week
- Transcript quantification import with automatic metadata detection☆67Updated 3 weeks ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Genetics training camp☆21Updated 5 years ago
- This is the ensembldb development repository.☆35Updated 2 months ago
- Explore the cancer relevance of your gene list☆52Updated last month
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated last year
- ☆26Updated 4 years ago
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆23Updated last week
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated 11 months ago
- Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.☆26Updated 6 months ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Updated 4 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Updated 4 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 3 years ago