meyresearch / DL_protein_ligand_affinityLinks
From Proteins to Ligands: Decoding Deep Learning Methods for Binding Affinity Prediction
☆18Updated last year
Alternatives and similar repositories for DL_protein_ligand_affinity
Users that are interested in DL_protein_ligand_affinity are comparing it to the libraries listed below
Sorting:
- Implementation of Protein Invariant Point Packer (PIPPack)☆35Updated last year
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆26Updated 6 months ago
- ☆21Updated last year
- code for SeqDance/ESMDance, biophysics-informed protein language models☆41Updated 7 months ago
- dMaSIF implementation for google colab☆34Updated 2 years ago
- Rank binders by structure modeling☆16Updated 8 months ago
- Code for designing biased protein states☆15Updated last month
- Code for the paper "Learning to engineer protein flexibility".☆22Updated 2 months ago
- benchmarking AI-powered docking methods from the perspective of virtual screening☆29Updated 10 months ago
- ☆27Updated 8 months ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆34Updated 2 years ago
- Docking Tool Benchmarking Workflow☆24Updated last year
- Fast and accurate molecular docking with an AI pose scoring function☆42Updated last year
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆19Updated last year
- Generative diverse protein backbones by protein language model☆34Updated 3 weeks ago
- Structure prediction of alternative protein conformations☆80Updated 8 months ago
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆32Updated 3 weeks ago
- Public version for Distance-AF☆28Updated 3 months ago
- A collection of tools that generate and analyse side-chain rotamer libraries☆10Updated last week
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆59Updated last month
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆43Updated 2 years ago
- ☆39Updated last year
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆30Updated 2 months ago
- ☆71Updated 8 months ago
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆19Updated 3 weeks ago
- ☆30Updated 5 months ago
- protein structure generation with sparse all-atom denoising models☆48Updated last month
- ☆21Updated 2 years ago
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆28Updated last year
- Fragment binding prediction with ColabFold☆38Updated 2 weeks ago