Alternatives and similar repositories for spikeforest2

Users that are interested in spikeforest2 are comparing it to the libraries listed below

• MouseLand / pykilosort
  WIP: Python port of Kilosort2
  ☆50Updated 2 years ago
• joao-semedo / communication-subspace
  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)
  ☆47Updated 5 years ago
• kwikteam / klusta
  Automatic spike sorting up to 64 channels
  ☆53Updated 4 years ago
• nelpy / nelpy
  Neuroelectrophysiology object model and data analysis in Python.
  ☆50Updated last week
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆127Updated last month
• int-brain-lab / ibllib
  IBL core shared libraries
  ☆63Updated this week
• buzsakilab / buzcode
  Code for internal lab sharing - polishing has started but is by no means complete
  ☆127Updated last year
• arthur-pe / slicetca
  Library to perform Slice Tensor Component Analysis (sliceTCA)
  ☆53Updated 5 months ago
• pillowlab / GLMspiketools
  Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).
  ☆42Updated 6 years ago
• SpikeInterface / spiketoolkit
  Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.
  ☆50Updated 3 years ago
• cortex-lab / sortingQuality
  Functions to assess quality of spike sorting results
  ☆34Updated last year
• jniediek / combinato
  Automatic spike sorting, cluster visualization, spike sorting GUIs
  ☆44Updated last year
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆150Updated this week
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆104Updated 7 months ago
• spiketools / spiketools
  Tools for analyzing spiking data from single-neuron recodings.
  ☆27Updated last month
• spyking-circus / spyking-circus
  Fast and scalable spike sorting in python
  ☆92Updated last week
• ShanechiLab / PyPSID
  Preferential Subspace Identification Algorithm
  ☆53Updated 2 months ago
• AllenInstitute / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆119Updated 11 months ago
• nsteinme / steinmetz-et-al-2019
  Code accompanying Steinmetz et al., 2019
  ☆60Updated 3 years ago
• egokcen / DLAG
  A dimensionality reduction framework for disentangling the flow of signals between populations of neurons
  ☆32Updated 3 months ago
• BarbourLab / lussac
  Package for automatic post-processing and merging of multiple spike-sorting analyses.
  ☆26Updated last week
• NeurodataWithoutBorders / matnwb
  A Matlab interface for reading and writing NWB files
  ☆54Updated last week
• anoushkajain / UnitRefine
  UnitRefine is a machine-learning toolbox that simplifies spike sorting curation by reducing manual curation.
  ☆25Updated 3 weeks ago
• LFPy / LFPy
  Python-module for calculation of extracellular potentials from multicompartment neuron models and networks
  ☆82Updated 6 months ago
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆93Updated 3 weeks ago
• Dynamics-of-Neural-Systems-Lab / MARBLE
  Package for the data-driven representation of non-linear dynamics over manifolds based on a statistical distribution of local phase portr…
  ☆76Updated last week
• ikinsella / locaNMF
  Pytorch implementation of LocaNMF
  ☆36Updated 5 years ago
• SpikeInterface / spiketutorials
  Tutorials for using SpikeInterface on extracellular datasets.
  ☆66Updated last year
• catalystneuro / neuroconv
  Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
  ☆62Updated this week
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆38Updated last year