A modular and user-friendly Python framework for protein and ligand engineering workflows on SLURM clusters
☆103Jul 28, 2026Updated 2 weeks ago
Alternatives and similar repositories for biopipelines
Users that are interested in biopipelines are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Biomolecular design by sampling from generative models☆51Updated this week
- Bayesian Optimization for protein design and mining☆26Jul 2, 2026Updated last month
- ☆27May 16, 2026Updated 2 months ago
- composite-objective protein design☆353Aug 1, 2026Updated last week
- Code for running BinderFlow☆66Jun 22, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A comprehensive repository of scripts, software, and tutorials for molecular evolution, computational protein design, and structural bioi …☆33Jul 26, 2026Updated 2 weeks ago
- A snakemake-based workflow for FEP and MM(PB/GB)SA calculations with GROMACS☆169May 9, 2026Updated 3 months ago
- ☆51Jun 15, 2026Updated last month
- A toolkit for enzyme discovery☆28May 18, 2026Updated 2 months ago
- GatorAffinity: Boosting Protein-Ligand Binding Affinity Prediction with Large-Scale Synthetic Structural Data☆35Apr 10, 2026Updated 4 months ago
- Protein Engineering via Exploration of an Energy Landscape☆142Updated this week
- protein folding app running on modal☆39May 30, 2026Updated 2 months ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆97Jul 31, 2026Updated last week
- Neural Iterative Selection-Expansion using LigandMPNN/LASErMPNN and Boltz-2x☆64Jul 14, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆24Aug 18, 2025Updated 11 months ago
- Claude Code skills for protein design☆151Jun 11, 2026Updated last month
- ☆14Mar 31, 2026Updated 4 months ago
- BindCraft modified to make PyRosetta use and installation optional: no license needed☆148Jul 10, 2026Updated last month
- ☆618Feb 6, 2025Updated last year
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing GNN☆74Jul 14, 2026Updated 3 weeks ago
- Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)☆69Jun 30, 2026Updated last month
- Structure prediction and design of proteins with noncanonical amino acids☆139Feb 1, 2026Updated 6 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆83May 1, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆26Jun 2, 2026Updated 2 months ago
- ☆85Mar 23, 2026Updated 4 months ago
- Biasing Conformational Sampling in AlphaFold 3 and Boltz-2 via Pair Representation Scaling☆29Jul 6, 2026Updated last month
- Python package to run molecular dynamics simulation of a protein-ligand complex in a single line of code.☆185Jul 8, 2026Updated last month
- PackDock: a Diffusion Based Side Chain Packing Model for Flexible Protein-Ligand Docking☆63Mar 30, 2026Updated 4 months ago
- OVO, an open-source ecosystem for de novo protein design☆143Jul 13, 2026Updated 3 weeks ago
- Codebase for SigmaDock: Untwisting Molecular Docking with SE(3) Fragmented Diffusion☆94Apr 7, 2026Updated 4 months ago
- ☆35Jul 18, 2026Updated 3 weeks ago
- ☆59Jul 15, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- User friendly and accurate binder design pipeline☆1,183May 11, 2026Updated 2 months ago
- IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.☆227Jun 23, 2026Updated last month
- HBDesigner is an algorithm that designs highly-connected hydrogen bonding networks that fit the requested design constraints onto an inpu…☆17Updated this week
- Inference code for RFdiffusion2☆438Apr 3, 2026Updated 4 months ago
- MULTI-evolve: a machine learning-guided end-to-end framework for engineering hyperactive multi-mutant proteins☆86Feb 27, 2026Updated 5 months ago
- Colab Notebooks covering deep learning tools for biomolecular structure prediction and design☆716Apr 17, 2026Updated 3 months ago
- PyMolAI provides Agentic interface to PyMol workflows, built on top of Open Source version of PyMol.☆163Feb 23, 2026Updated 5 months ago