sorenwacker / ms-peakonly
Peak detection for untargeted metabolomics using Neural Network. High-level API based on peakonly by @Arseha.
☆16Updated 11 months ago
Alternatives and similar repositories for ms-peakonly:
Users that are interested in ms-peakonly are comparing it to the libraries listed below
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆32Updated 3 years ago
- A bioinformatic tool facilitating automated in-source fragmentation identification☆10Updated 2 years ago
- Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets☆12Updated 3 years ago
- ☆10Updated 4 months ago
- A known-to-unknown metabolite identification workflow☆20Updated 4 years ago
- Analysis and benchmarking of mass spectra similarity measures using gnps data set.☆24Updated 3 years ago
- A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.☆14Updated last year
- Python pipeline for metabolomics data preprocessing, QC, standardization and annotation☆14Updated 4 months ago
- Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidom…☆13Updated last year
- ☆9Updated 7 months ago
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆18Updated 5 months ago
- R-package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics☆16Updated 11 months ago
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆16Updated 5 months ago
- ☆10Updated 3 years ago
- ☆24Updated last year
- ☆8Updated 9 months ago
- ☆23Updated 2 weeks ago
- A small library to provide peak picking for software processing mass spectrometry data☆21Updated 4 months ago
- TidyMS: Tools for working with MS data in untargeted metabolomics☆55Updated 9 months ago
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆18Updated last year
- ☆20Updated last year
- RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.☆25Updated 2 weeks ago
- MS2Tox is a machine learning tool for predicting ecotoxicity of unidentified chemicals in water by nontarget LC/HRMS☆16Updated 4 months ago
- A Deep Learning Framework to Interpret Raw Mass Spectrometry (m/z) Data☆19Updated last year
- MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.☆16Updated last year
- A package to cluster and visualise MS/MS spectral data☆11Updated 4 years ago
- A Pipeline for LC-MS/MS Metabolomics Data Process and Analysis☆13Updated last week
- ☆25Updated last year
- allows MAGMa metabolite identification with dynamic parameter selection☆9Updated 6 years ago
- Spectral entropy for mass spectrometry data.☆26Updated last month