kiharalab / Emap2secPlusLinks
Emap2sec+: Detecting Protein and DNA/RNA Structures in Cryo-EM Maps of Intermediate Resolution Using Deep Learning
☆18Updated last month
Alternatives and similar repositories for Emap2secPlus
Users that are interested in Emap2secPlus are comparing it to the libraries listed below
Sorting:
- CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.☆32Updated last year
- A comprehensive foundation model for cryo-EM image processing☆51Updated this week
- ☆56Updated 3 months ago
- DiffModeler: a diffusion model based protein complex structure modeling tool.☆59Updated last month
- From cryo-EM density map to atomic structure☆31Updated 4 months ago
- Interactive molecular dynamics based model building into low-resolution crystallographic and cryo-EM maps☆40Updated 5 months ago
- ☆88Updated last year
- Public version for Distance-AF☆30Updated 4 months ago
- EM-GAN is a computational tool, which enables capturing protein structure information from cryo-EM maps more effectively than raw maps. I…☆17Updated 10 months ago
- ☆15Updated last year
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆42Updated last year
- Useful aliases and startup settings for ChimeraX☆38Updated 5 months ago
- MapQ is a plugin for UCSF Chimera to calculate Q-scores of an atomic model in a cryoEM map.☆17Updated 4 months ago
- Official repository of PXDesign☆133Updated last week
- Automatic atomic model building program for cryo-EM maps☆157Updated 8 months ago
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆97Updated 7 months ago
- Modelling protein conformational landscape with Alphafold☆54Updated 4 months ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆52Updated 4 months ago
- Rigid body fitting of atomic strucures in cryo-electron microscopy density maps☆22Updated last month
- Open source code for AlphaFold.☆38Updated 3 years ago
- Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.☆99Updated last week
- A Python package to generate free energy landscape (FEL) of molecular dynamics (MD) trajectory obtained from GROMACS. It also extracts th…☆14Updated 9 months ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆98Updated 2 years ago
- ☆61Updated last year
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59Updated 2 years ago
- ☆51Updated last year
- Deep learning tools for converting cryo-EM density maps to protein structures☆19Updated 11 months ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆46Updated 2 years ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆80Updated last year
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆70Updated last year