masa-ue / SVDDView external linksLinks
Derivative-Free Guidance in Diffusion Models with Soft Value-Based Decoding. For controlled generation in DNA, RNA, proteins, molecules (+ images)
☆36Jan 7, 2026Updated last month
Alternatives and similar repositories for SVDD
Users that are interested in SVDD are comparing it to the libraries listed below
Sorting:
- Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"☆64May 10, 2025Updated 9 months ago
- ☆23Dec 5, 2025Updated 2 months ago
- Dirichlet Diffusion Score Model for Biological Sequence Generation.☆64Feb 12, 2025Updated last year
- Official Code for Local Search GFlowNets (ICLR 2024 Spotlight)☆23Feb 27, 2025Updated 11 months ago
- [NeurIPS 24] Official Implementation (Pytorch) of "Inversion-based Latent Bayesian Optimization"☆10Nov 15, 2024Updated last year
- Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.☆11Dec 10, 2024Updated last year
- Evolutionary Algorithm with Diffusion Models for Protein Design☆30Jan 7, 2026Updated last month
- Code for our paper "Unlocking Guidance for Discrete State-Space Diffusion and Flow Models"☆33Apr 18, 2025Updated 9 months ago
- [ICLR 2024 Spotlight] Code for the paper "Decision ConvFormer: Local Filtering in MetaFormer is Sufficient for Decision Making"☆12Apr 22, 2024Updated last year
- Protein representation and design under a single training scheme☆24Dec 17, 2025Updated last month
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆35Dec 8, 2025Updated 2 months ago
- Counterfactual Generative Modeling with Variational Causal Inference (ICLR 2025)☆20Sep 30, 2025Updated 4 months ago
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated last year
- Code for the paper "Molecule Design by Latent Space Energy-based Modeling and Gradual Distribution Shifting" in UAI 2023☆15Nov 15, 2023Updated 2 years ago
- Protein Design with Guided Discrete Diffusion☆140Feb 21, 2024Updated last year
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆17Jan 14, 2025Updated last year
- Official repository for discrete Walk-Jump Sampling (dWJS)☆58Jun 3, 2024Updated last year
- Official repository for discrete Walk-Jump Sampling (dWJS)☆55Dec 17, 2023Updated 2 years ago
- A curated list of papers on graph transfer learning (GTL).☆18Oct 23, 2023Updated 2 years ago
- A convenient package for the lazy torch programmer to leave all your :cuda() calls as-is when running on CPU☆14Apr 27, 2015Updated 10 years ago
- ☆29Nov 23, 2025Updated 2 months ago
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆17Feb 18, 2025Updated 11 months ago
- Analyses related to the Borzoi paper.☆25Dec 14, 2025Updated 2 months ago
- Code for RL-DIF☆16Jun 24, 2025Updated 7 months ago
- protein backbone refinement☆15Sep 12, 2024Updated last year
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆40Jun 17, 2025Updated 7 months ago
- ☆17May 20, 2025Updated 8 months ago
- Benchmark for Biophysical Sequence Optimization Algorithms☆20May 21, 2025Updated 8 months ago
- Official Code for Guided Trajectory Generation with Diffusion Models for Offline Model-based Optimization (NIPS 2024)☆21Aug 15, 2024Updated last year
- Code for "Multi-Objective GFlowNets"☆17Jul 12, 2023Updated 2 years ago
- Implementing Controlled Monte Carlo Diffusions (ICLR 2024)☆17Sep 30, 2024Updated last year
- ☆76Oct 27, 2021Updated 4 years ago
- ☆42Aug 29, 2025Updated 5 months ago
- Course Website for "AI618: Generative Model and Unsupervised Learning"☆37May 23, 2023Updated 2 years ago
- Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…☆20Aug 8, 2024Updated last year
- Inference-Time Alignment in Protein Diffusion Models☆51Jan 7, 2026Updated last month
- A Modular Architecture for Deep Learning Systems☆53May 23, 2025Updated 8 months ago
- Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge☆46Oct 17, 2024Updated last year
- Official repository for the Monte Carlo guided Diffusion for Bayesian linear inverse problems paper:☆21Dec 16, 2024Updated last year