thehyve / ukbiobank-omop-etl
Resources and documentation for UK Biobank to OMOP CDM v5.3.1 conversion
☆9Updated 4 years ago
Alternatives and similar repositories for ukbiobank-omop-etl:
Users that are interested in ukbiobank-omop-etl are comparing it to the libraries listed below
- Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi☆20Updated 3 years ago
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆27Updated 3 years ago
- Jupyter Notebooks and other code for 4CE data visualizations.☆13Updated 2 years ago
- Workbench demo project: cross-analysis of AoU and UKB.☆11Updated last year
- Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank☆24Updated 4 years ago
- Map your disease and phenotype terms to the Open Targets platform ontology☆21Updated 3 months ago
- R package to easily interface with OMOP-formatted EHR data.☆35Updated 4 years ago
- ETL UK-Biobank☆13Updated 2 years ago
- Render HTML reports from parametrized jupyter notebooks or Rmarkdown documents.☆9Updated 3 months ago
- ☆5Updated last week
- ☆14Updated last month
- Outcomes Insights' Data Model for Clinical Research☆17Updated last year
- kmdata: A Database of Reconstructed Individual Patient Level Data from 153 Oncology Clinical Trials☆13Updated 2 years ago
- A software toolkit for the interconversion of standard data models for phenotypic data☆12Updated last week
- Develop a function to be incorporated into the R package 'icd' that will convert International Classification of Diseases codes from Nint…☆20Updated 5 years ago
- R interface to NLM RxNorm API to get drug names and class based on RxCUI☆26Updated 10 months ago
- Modular & interactive analysis components for bioinformatics☆17Updated 3 months ago
- HDR UK Schemas☆12Updated last year
- This is an R package that implements a library of standard queries that run against the OMOP-CDM.☆15Updated 8 months ago
- Prepare UK Biobank Electronic Health Record data for research☆26Updated 2 years ago
- Open Targets Genetics UI☆14Updated 3 weeks ago
- A pipe friendly way to interact with an OMOP Common Data Model☆12Updated this week
- An R package for evaluating phenotype algorithms.☆17Updated 4 months ago
- Source code for the GWAS Diversity Monitor☆15Updated last month
- ☆11Updated this week
- An R package that facilitates access to a variety of OMOP CDM sample data sets.☆43Updated 5 months ago
- Publication: Linked electronic health records for research on a nationwide cohort including over 54 million people in England☆18Updated last year
- Shiny apps in this repository will be automatically deployed to the OHDSI Shiny server.☆27Updated this week
- Repository for development of the genomic module of the CDM.☆20Updated 5 years ago
- FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.☆12Updated last week