thehyve / ukbiobank-omop-etl
Resources and documentation for UK Biobank to OMOP CDM v5.3.1 conversion
☆9Updated 4 years ago
Alternatives and similar repositories for ukbiobank-omop-etl:
Users that are interested in ukbiobank-omop-etl are comparing it to the libraries listed below
- Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi☆20Updated 4 years ago
- R vignettes/pkgdown for elementary statistics for a summer course☆14Updated 2 months ago
- Map your disease and phenotype terms to the Open Targets platform ontology☆21Updated 4 months ago
- ETL UK-Biobank☆13Updated 2 years ago
- Workbench demo project: cross-analysis of AoU and UKB.☆12Updated last year
- Render HTML reports from parametrized jupyter notebooks or Rmarkdown documents.☆9Updated 4 months ago
- R package to streamline use of the AllofUs researcher workbench☆16Updated 4 months ago
- Modular & interactive analysis components for bioinformatics☆17Updated 3 weeks ago
- kmdata: A Database of Reconstructed Individual Patient Level Data from 153 Oncology Clinical Trials☆14Updated 2 years ago
- Outcomes Insights' Data Model for Clinical Research☆18Updated last year
- R package to easily interface with OMOP-formatted EHR data.☆35Updated 5 years ago
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆28Updated 3 years ago
- A web-based version of the codebook, which generates a concise summary of every variable in a dataset.☆12Updated 2 years ago
- Develop a function to be incorporated into the R package 'icd' that will convert International Classification of Diseases codes from Nint…☆20Updated 5 years ago
- Jupyter Notebooks and other code for 4CE data visualizations.☆13Updated 2 years ago
- ☆10Updated 5 months ago
- Shiny apps in this repository will be automatically deployed to the OHDSI Shiny server.☆27Updated last month
- Extends miniwdl to run workflows on AWS Batch & EFS☆22Updated last year
- Software for analyzing high dimensional dose-response data☆19Updated 7 months ago
- This is an R package that implements a library of standard queries that run against the OMOP-CDM.☆15Updated 9 months ago
- A software toolkit for the interconversion of standard data models for phenotypic data☆12Updated last week
- A browser extension and web application for extracting gene sets from GEO and piping them to Enrichr.☆14Updated last year
- A pipe friendly way to interact with an OMOP Common Data Model☆12Updated 2 weeks ago
- Open Targets Genetics UI☆14Updated last month
- ☆15Updated 2 years ago
- Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank☆24Updated 4 years ago
- R package for easy access, manipulation, and analysis of the Monarch Initiative or other KGX-formatted knowledge graphs.☆14Updated 3 weeks ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 6 years ago
- HDR UK Schemas☆12Updated last year
- Source code for the GWAS Diversity Monitor☆15Updated 2 months ago