A fine-tuned version of ProteinMPNN for generating stable cyclic peptide sequences
☆38Feb 2, 2026Updated 2 months ago
Alternatives and similar repositories for CyclicMPNN
Users that are interested in CyclicMPNN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆37Jun 17, 2025Updated 10 months ago
- Deep-learning models for Drug Discovery and Quantum Chemistry☆16Aug 11, 2017Updated 8 years ago
- Implementation of methods to sample from Boltzmann distributions☆22Jan 24, 2023Updated 3 years ago
- Tools to build coarse grained models and perform simulations with OpenMM☆24Dec 16, 2022Updated 3 years ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆27Mar 3, 2024Updated 2 years ago
- Deep generative modeling of protein structural ensembles☆37Apr 20, 2026Updated last week
- bakerlab pymol scripts☆26Feb 6, 2020Updated 6 years ago
- ☆46Dec 30, 2025Updated 4 months ago
- ☆20Jan 14, 2024Updated 2 years ago
- Disordered protein ensemble prediction☆14Apr 2, 2026Updated 3 weeks ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated last year
- Official implementation of "BInD: Bond and Interaction-Generating Diffusion Model for Multi-Objective Structure-Based Drug Design" (Advan…☆31Jul 24, 2025Updated 9 months ago
- Scripts used for Mulligan et al. (2020): Computationally-designed peptide macrocycle inhibitors of New Delhi metallo-beta-lactamase 1☆19Aug 20, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Official implementation of "PIGNet2: a versatile deep learning-based proteinligand interaction prediction model for binding affinity scor…☆22Aug 18, 2025Updated 8 months ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Jul 9, 2023Updated 2 years ago
- Grid Generation☆11Mar 7, 2024Updated 2 years ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆44Aug 5, 2025Updated 8 months ago
- C++ implementation for 《"GrabCut" — Interactive Foreground Extraction using Iterated Graph Cuts》☆12Jul 25, 2023Updated 2 years ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆84Apr 21, 2026Updated last week
- Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides …☆13Feb 25, 2025Updated last year
- 南京师范大学大学生创新训练计划项目:大模型与知识图谱(LLM meet KG)☆12Apr 21, 2025Updated last year
- Machine Learning tools for Coarse Graining☆26Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An efficient method for the conversion from internal to Cartesian coordinates that utilizes the platform-agnostic JAX Python library.☆21Jun 12, 2024Updated last year
- ☆15Apr 13, 2026Updated 2 weeks ago
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆72Jul 19, 2024Updated last year
- Homomer symmetry prediction from protein sequence☆44Mar 13, 2025Updated last year
- Notebook for standardization of actvity data, nonadditivity analysis and its evaluation.☆12Mar 16, 2023Updated 3 years ago
- ☆97Apr 16, 2026Updated 2 weeks ago
- Source code for the BUDE Alanine Scan web application.☆12May 27, 2025Updated 11 months ago
- From cryo-EM density map to atomic structure☆27Mar 31, 2026Updated last month
- ☆11Mar 12, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A distance distribution-based visualization method for atomic pair energy and precise prediction of absolute binding free energy.☆17Feb 4, 2025Updated last year
- Scripts to benchmark and train foldseek☆41May 22, 2024Updated last year
- ☆127Apr 4, 2026Updated 3 weeks ago
- Profluent-E1 family of Protein Encoder Models☆111Mar 11, 2026Updated last month
- ☆16Dec 10, 2024Updated last year
- A deep learning-based predictor of enzyme optimal pH☆8Jun 25, 2025Updated 10 months ago
- A python implementation of pdb2oniom for QM/MM (ONIOM) calculations☆11Oct 2, 2025Updated 6 months ago