ibivu / protein-glue
Accompanying code for the ProteinGLUE method
☆11Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for protein-glue
- Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"☆11Updated last year
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆50Updated 8 months ago
- Retrieved Sequence Augmentation for Protein Representation Learning☆45Updated last year
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆35Updated this week
- Code for "Unifying Molecular and Textual Representations via Multi-task Language Modelling" @ ICML 2023☆35Updated 2 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆47Updated 6 months ago
- Official Pytorch implementation of PLUS (Protein sequence representations Learned Using Structural information), IEEE Access 2021☆41Updated last year
- Official repository for discrete Walk-Jump Sampling (dWJS)☆49Updated 11 months ago
- The first large protein language model trained follows structure instructions.☆71Updated 5 months ago
- Bioinformatics'2022 PerceiverCPI: A nested cross-attention network for compound-protein interaction prediction☆35Updated last year
- Comparison of active site and full kinase sequences for drug-target affinity prediction and molecular generation. Full paper: https://pub…☆35Updated 2 years ago
- Code for 'On Pre-trained Language Models For Antibody'☆30Updated last year
- Open source code for AlphaFold to extract protein embeddings☆25Updated 3 years ago
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Updated 2 years ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆42Updated 3 weeks ago
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆82Updated last year
- Official repository for discrete Walk-Jump Sampling (dWJS)☆45Updated 5 months ago
- Code for Fold2Seq paper from ICML 2021☆49Updated 2 years ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆82Updated 2 weeks ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆29Updated 3 years ago
- PaccMann models for protein language modeling☆40Updated 3 years ago
- ☆57Updated 7 months ago
- Aligning protein generative models with experimental fitness☆71Updated last month
- Mono-repo for protein utilities.☆17Updated 3 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆22Updated 8 months ago
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆49Updated 2 years ago
- Protein Design with Guided Discrete Diffusion☆116Updated 9 months ago
- InteractionGraphNet: a Novel and Efficient Deep Graph Representation Learning Framework for Accurate Protein-Ligand Interaction Predictio…☆29Updated 3 years ago
- Deploying synthetic coevolution and machine learning to engineer protein-protein interactions☆15Updated last year