Alternatives and similar repositories for RMSD

Users that are interested in RMSD are comparing it to the libraries listed below

• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆54Updated 3 years ago
• ohuelab / ColabDesign-cyclic-binder
  ☆37Updated 2 years ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆25Updated 2 years ago
• GENTEL-lab / AuroBind
  ☆38Updated last week
• stebliankin / piston
  Evaluating Protein Binding Interfaces with Transformer Networks
  ☆47Updated 2 years ago
• Furman-Lab / PatchMAN
  ☆27Updated last month
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆33Updated 2 years ago
• tommyhuangthu / UniDesign
  Universal framework for physically based computational protein design
  ☆37Updated 2 years ago
• tiantz17 / PocketAnchor
  Learning Structure-based Pocket Representations for Protein-Ligand Interaction Prediction
  ☆35Updated 2 years ago
• WeiLab-Biology / DeepProSite
  ☆34Updated 2 years ago
• RosettaCommons / FvHallucinator
  ☆28Updated 3 years ago
• jivankandel / PUResNet
  Predicting protein-ligand binding sites using deep convolutional neural network
  ☆50Updated last year
• samgoldman97 / enzyme-datasets
  Enzyme datasets used to benchmark enzyme-substrate promiscuity models
  ☆40Updated 4 years ago
• ChenPy00 / PPB-Affinity
  Baseline model for PPB-Affinity benchmark data
  ☆34Updated 8 months ago
• zhaisilong / PepPCBench
  Comprehensive Benchmark for Protein-Peptide Complex Structure Prediction with AlphaFold3
  ☆18Updated 4 months ago
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated last week
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆36Updated 2 years ago
• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆54Updated 5 months ago
• Tessier-Lab-UMich / Emi_Pareto_Opt_ML
  ☆21Updated 3 years ago
• luwei0917 / AlphaFold3_PPI
  ☆15Updated last year
• dahjan / DMS_opt
  ☆74Updated 5 years ago
• bjornwallner / alphafoldv2.2.0
  Open source code for AlphaFold.
  ☆38Updated 3 years ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆42Updated last year
• ChakradharG / PeptideBERT
  Transformer Based Language Model for Peptide Property Prediction
  ☆48Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆61Updated 8 months ago
• MolecularAI / PepINVENT
  ☆59Updated last week
• pgmikhael / clipzyme
  Reaction-Conditioned Virtual Screening of Enzymes
  ☆41Updated 7 months ago
• PKUliujl / GeoSeqBuilder
  ☆32Updated 11 months ago
• nekitmm / DLPacker
  DLPacker
  ☆32Updated last year
• sokrypton / af2bind
  ☆54Updated 2 months ago