Calculate the RMSD between two protein structures
☆12Jun 29, 2022Updated 4 years ago
Alternatives and similar repositories for RMSD
Users that are interested in RMSD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cyclic peptide binder design using a fragment docking and assembling strategy☆12May 20, 2025Updated last year
- ☆10Mar 8, 2024Updated 2 years ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆20Mar 6, 2024Updated 2 years ago
- Code for Fold2Seq paper from ICML 2021☆50May 25, 2022Updated 4 years ago
- My work on building a deep neural network for fast and accurate protein protein interaction prediction☆11Mar 13, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python API for Pharmer☆12Jun 14, 2019Updated 7 years ago
- ☆16Aug 22, 2025Updated last year
- A platform to do RNA science☆28Mar 7, 2021Updated 5 years ago
- Accompanying code for the ProteinGLUE method☆13Apr 12, 2022Updated 4 years ago
- ☆16Jan 10, 2023Updated 3 years ago
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 5 years ago
- ☆18Mar 13, 2024Updated 2 years ago
- TUI for browsing, canceling, and inspecting SLURM jobs☆13Nov 13, 2023Updated 2 years ago
- ☆18Dec 22, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A docker image containing changes applied to the ETKDG conformer generator workflow, with example scripts.☆13Jun 15, 2019Updated 7 years ago
- Integrating Deep Neural Networks and Symbolic Inference for Organic Reactivity Prediction☆13Jan 8, 2022Updated 4 years ago
- Functions to scrape GPCR data from the web.☆19Nov 18, 2021Updated 4 years ago
- ☆25Jul 5, 2023Updated 3 years ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysis☆10Nov 6, 2023Updated 2 years ago
- ☆20Mar 31, 2021Updated 5 years ago
- Implementation of the D3PM algorithm (diffusion with categorical variable)☆11Jan 12, 2026Updated 9 months ago
- A collection of latest Hyperbolic LLM Models with the corresponding paper titles, years of publication, links to the code, and dataset li…☆14Jun 29, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆16Sep 8, 2023Updated 3 years ago
- The present study is finalised to determine the most advanced models in the literature capable of producing new high-quality molecules st…☆10Aug 31, 2021Updated 5 years ago
- Pipeline for protein-protein interaction prediction☆27Feb 22, 2022Updated 4 years ago
- CONTRAfold-SE - Learning RNA secondary structure (only) from structure probing data☆11Jul 11, 2024Updated 2 years ago
- PAGAN2 multiple sequence aligner☆12Sep 4, 2026Updated last month
- PyTorch code accompanying the paper "Self-Improved Retrosynthetic Planning" (ICML 2021).☆25Jun 10, 2021Updated 5 years ago
- Ramirez Lab WIKI, where you could find Tutorials, Script Library, Gallery, FAQ, and a little bit more☆13Sep 11, 2024Updated 2 years ago
- smplify code for point cloud based HMR☆10Jan 11, 2022Updated 4 years ago
- Methods of druglikeness prediction☆16Nov 7, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Cyclic-peptide - protein complexes benchmark and associated scripts and data☆16Aug 31, 2024Updated 2 years ago
- ☆16Dec 14, 2023Updated 2 years ago
- An official Molecule Transformer Drug Target Interaction (MT-DTI) model☆37Nov 6, 2020Updated 5 years ago
- Mirror of pDynamo computational chemistry software, which does not currently use a public version control repository☆10Feb 23, 2017Updated 9 years ago
- K-means clustering☆22Sep 7, 2021Updated 5 years ago
- ☆33Jun 1, 2024Updated 2 years ago
- aligning molecules☆10Apr 24, 2021Updated 5 years ago