sarisabban / RMSDLinks
Calculate the RMSD between two protein structures
☆12Updated 3 years ago
Alternatives and similar repositories for RMSD
Users that are interested in RMSD are comparing it to the libraries listed below
Sorting:
- ☆34Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated 2 years ago
- ☆36Updated 2 weeks ago
- ☆28Updated 3 years ago
- Making Protein folding accessible to all!☆24Updated last year
- Evaluating Protein Binding Interfaces with Transformer Networks☆46Updated 2 years ago
- ☆27Updated 2 months ago
- ☆37Updated 2 years ago
- Baseline model for PPB-Affinity benchmark data☆33Updated 6 months ago
- ☆21Updated 3 years ago
- Physical energy function for protein sequence design☆34Updated 2 years ago
- ☆10Updated 2 years ago
- Learning Structure-based Pocket Representations for Protein-Ligand Interaction Prediction☆34Updated 2 years ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆54Updated 3 years ago
- Universal framework for physically based computational protein design☆35Updated 2 years ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆51Updated last week
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆42Updated last year
- Comprehensive Benchmark for Protein-Peptide Complex Structure Prediction with AlphaFold3☆17Updated 3 months ago
- Improving protein–ligand docking and screening accuracies by incorporating a scoring function correction term☆29Updated last year
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆84Updated 2 months ago
- Reaction-Conditioned Virtual Screening of Enzymes☆40Updated 6 months ago
- Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models☆42Updated 11 months ago
- ☆61Updated last year
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆40Updated 4 years ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆68Updated 5 months ago
- ☆46Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs", …☆89Updated 6 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆84Updated this week
- DLPacker☆31Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago