Alternatives and similar repositories for NGS

Users that are interested in NGS are comparing it to the libraries listed below

• BioOmics / iSeq
  Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
  ☆221Updated 3 weeks ago
• ShujiaHuang / ilus
  A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysi…
  ☆140Updated 5 months ago
• indexofire / pathongs
  Pathogen NGS Documentary
  ☆150Updated last year
• WGLab / dragonstar2019
  ☆136Updated 6 years ago
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆154Updated last year
• wanjinhu / Metagenomic-Analysis-Pipeline
  Metagenomic sequence data analysis pipeline
  ☆32Updated 2 months ago
• wwood / kingfisher-download
  Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
  ☆280Updated 2 months ago
• Ming-Lian / Bioinformatics-skills
  生物信息学技能提升，专注于工具使用与编程
  ☆157Updated 3 years ago
• YongxinLiu / Metagenome
  Metagenome analysis pipeline
  ☆99Updated 4 years ago
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆148Updated 2 years ago
• Ming-Lian / NGS-analysis
  二代测序数据分析
  ☆377Updated last year
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆226Updated 4 months ago
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆244Updated this week
• ENCODE-DCC / rna-seq-pipeline
  ☆157Updated 3 years ago
• Ming-Lian / Bioinfo_LeetCode
  让我们以刷LeetCode题目的形式，来编程解决生物信息学问题吧，Come on
  ☆200Updated 2 years ago
• YongxinLiu / QIIME2ChineseManual
  QIIME 2中文文档(QIIME 2 Chinese Manual)
  ☆295Updated 2 years ago
• Xinglab / rmats-turbo
  ☆279Updated 3 weeks ago
• BGI-flexlab / SOAPnuke
  A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files
  ☆111Updated last year
• YongxinLiu / EasyMicrobiome
  ☆128Updated this week
• xuzhougeng / Learn-Bioinformatics-by-RNA-seq
  ☆186Updated 8 years ago
• rnnh / bioinfo-notebook
  🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
  ☆195Updated 5 years ago
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆299Updated 2 years ago
• usadellab / Trimmomatic
  ☆274Updated last month
• pzweuj / pzweuj.github.io
  Go to
  ☆36Updated this week
• deeptools / HiCExplorer
  HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
  ☆256Updated 4 months ago
• shiquan / bamdst
  a lightweight bam file depth statistical tool
  ☆157Updated last year
• CompEpigen / figeno
  Tool for plotting sequencing data along genomic coordinates.
  ☆321Updated 4 months ago
• nf-core / methylseq
  Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
  ☆180Updated last week
• ablab / IsoQuant
  Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
  ☆192Updated last week
• WGLab / doc-ANNOVAR
  Documentation for the ANNOVAR software
  ☆245Updated 3 months ago