Alternatives and similar repositories for NGS

Users that are interested in NGS are comparing it to the libraries listed below

• BioOmics / iSeq
  Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
  ☆208Updated last month
• wanjinhu / Metagenomic-Analysis-Pipeline
  Metagenomic sequence data analysis pipeline
  ☆33Updated 3 weeks ago
• indexofire / pathongs
  Pathogen NGS Documentary
  ☆148Updated last year
• WGLab / dragonstar2019
  ☆135Updated 6 years ago
• ShujiaHuang / ilus
  A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysi…
  ☆139Updated 3 months ago
• YongxinLiu / Metagenome
  Metagenome analysis pipeline
  ☆99Updated 4 years ago
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆153Updated last year
• ZhijunBioinf / Teaching_GenomicLab
  基因组学实验
  ☆14Updated 2 years ago
• wwood / kingfisher-download
  Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
  ☆274Updated 2 weeks ago
• YongxinLiu / EasyMicrobiome
  ☆119Updated last month
• pzweuj / pzweuj.github.io
  Go to
  ☆36Updated this week
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆140Updated last year
• rnnh / bioinfo-notebook
  🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
  ☆185Updated 4 years ago
• Ming-Lian / NGS-analysis
  二代测序数据分析
  ☆372Updated last year
• Xinglab / rmats-turbo
  ☆272Updated 9 months ago
• YongxinLiu / QIIME2ChineseManual
  QIIME 2中文文档(QIIME 2 Chinese Manual)
  ☆289Updated 2 years ago
• ENCODE-DCC / rna-seq-pipeline
  ☆154Updated 2 years ago
• CompEpigen / figeno
  Tool for plotting sequencing data along genomic coordinates.
  ☆308Updated 2 months ago
• Ming-Lian / Bioinformatics-skills
  生物信息学技能提升，专注于工具使用与编程
  ☆156Updated 3 years ago
• Tong-Chen / s-plot
  A simple plot library
  ☆52Updated 8 years ago
• suhrig / arriba
  Fast and accurate gene fusion detection from RNA-Seq data
  ☆245Updated last week
• biolxy / handbook-cancer-genomics
  my first book, Biological information analysis of cancer tumors
  ☆26Updated 3 years ago
• nloyfer / wgbs_tools
  tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
  ☆166Updated 3 months ago
• taowenmicro / phyloseq_translate
  phyloseq R
  ☆13Updated 5 years ago
• GoekeLab / bambu
  Reference-guided transcript discovery and quantification for long read RNA-Seq data
  ☆216Updated 2 weeks ago
• WGLab / doc-ANNOVAR
  Documentation for the ANNOVAR software
  ☆245Updated last month
• iMetaScience / iMetaPlot
  iMeta teaches you to plot
  ☆53Updated 2 years ago
• YongxinLiu / Note
  ☆125Updated 3 years ago
• Ming-Lian / Bioinfo_LeetCode
  让我们以刷LeetCode题目的形式，来编程解决生物信息学问题吧，Come on
  ☆197Updated 2 years ago
• YongxinLiu / Liu2020ProteinCell
  Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome
  ☆41Updated 5 years ago