hackseq / hackseq_projects_2016Links
☆8Updated 8 years ago
Alternatives and similar repositories for hackseq_projects_2016
Users that are interested in hackseq_projects_2016 are comparing it to the libraries listed below
Sorting:
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- a string to graph aligner☆41Updated 9 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆14Updated 5 years ago
- Workflows I find helpful for fungal genome annotation☆21Updated 2 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11Updated 5 years ago
- CRAM format specification and java API for read data.☆60Updated 6 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 2 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- Convert CWL to WDL☆17Updated 8 years ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆58Updated last year
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- ☆43Updated 9 years ago
- ☆37Updated 4 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- H3ABioNet 16S rDNA diverstity analysis package☆19Updated 6 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated last month
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Updated 5 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Updated 7 years ago
- Pipeline for poreathon☆14Updated 10 years ago
- Fast and memory-efficient sequencing error corrector☆93Updated last year
- SVG based genome viewer written in javascript using D3☆33Updated 10 years ago
- RTG Core: Software for alignment and analysis of next-gen sequencing data.☆47Updated 2 months ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago