hackseq / hackseq_projects_2016
☆8Updated 8 years ago
Related projects: ⓘ
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- Genome-wide reconstruction of complex structural variants☆40Updated 2 years ago
- SV detection from paired end reads mapping☆38Updated 14 years ago
- Linked-Read Alignment Tool☆28Updated 5 years ago
- Graphite - Graph-based variant adjudication☆28Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated last year
- Manuscript describing ChronQC is now available online in Bioinformatics☆17Updated 5 years ago
- create a gemini-compatible database from a VCF☆55Updated 3 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 6 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆21Updated 6 years ago
- A tool to benchmark mappers and different parameters within minutes☆43Updated 5 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 5 years ago
- Utilities to create and analyze gVCF files☆39Updated 7 years ago
- (WIP) best-practices workflow for rare disease☆58Updated 2 months ago
- CRAM format specification and java API for read data.☆58Updated 5 years ago
- a pileup library that embraces the huge☆42Updated 3 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11Updated 4 years ago
- Toil workflows for common genomic pipelines☆32Updated 4 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆34Updated 11 months ago
- DEPRECIATED! Please use nf-core/tools instead☆19Updated 6 years ago
- A collection of publications on comparison of high-throughput sequencing technologies.☆26Updated 4 months ago
- a string to graph aligner☆40Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆49Updated 3 months ago
- The gkno launcher for executing tools or pipelines☆32Updated 7 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆34Updated last year
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 5 years ago