BIOP / IPA4LSx
ImageJ Macro Scripts showcased during Image Processing and Analysis for Life Scientists MOOC on EdX
☆25Updated 5 years ago
Alternatives and similar repositories for IPA4LSx:
Users that are interested in IPA4LSx are comparing it to the libraries listed below
- Generate markdown notebooks from ImageJ Macro☆24Updated 4 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆36Updated last month
- A platform for compiling, analyzing, and exploring tracking data☆43Updated 3 weeks ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆97Updated 2 years ago
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 5 months ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆24Updated 6 months ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- ImageJ macros and scripts written at the imaging facility MRI☆33Updated this week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆133Updated last month
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆14Updated 3 weeks ago
- QuickFigures is a toolset for creating scientific figures see publication for details☆35Updated last year
- ☆19Updated 3 years ago
- An introduction to bioimage analysis - http://bioimagebook.github.io☆67Updated 8 months ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆133Updated 4 years ago
- quantixed FIJI update site☆16Updated 2 months ago
- ☆25Updated 2 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆48Updated last month
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- ☆10Updated 4 years ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆67Updated 6 months ago
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Updated 4 years ago
- Lectures for a napari training course☆50Updated last year
- Analysis of TrackMate XML outputs in R☆12Updated 9 months ago
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆12Updated 3 years ago
- ☆10Updated 4 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆15Updated 3 weeks ago
- MSSR Plugin☆13Updated 5 months ago