Alternatives and similar repositories for viime

Users that are interested in viime are comparing it to the libraries listed below

• microbiomedata / nmdc-server
  Data portal client and server for NMDC.
  ☆10Updated this week
• SuLab / mark2cure
  Mark2Cure allows anyone that can read English, regardless of background, to help in the process of biomedical discovery.
  ☆14Updated 2 years ago
• ismms-himc / codex_dashboard
  Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
  ☆17Updated last year
• bihealth / sodar-server
  SODAR: System for Omics Data Access and Retrieval
  ☆15Updated this week
• MoseleyBioinformaticsLab / mwtab
  The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for a…
  ☆12Updated this week
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 9 months ago
• EmanuelGoncalves / crispy
  Python module to analyse CRISPR-based libraries
  ☆13Updated 4 years ago
• gmiaslab / pyiomica
  PyIOmica (pyiomica) is a Python package for omics analyses.
  ☆15Updated 2 years ago
• CNAG-Biomedical-Informatics / convert-pheno
  A software toolkit for the interconversion of standard data models for phenotypic data
  ☆13Updated last week
• boutroslab / HTSvis
  A web app for exploratory data analysis of high-throughput screens (HTS)
  ☆17Updated 6 years ago
• saezlab / lipyd
  Python module for lipidomics LC MS/MS data analysis
  ☆15Updated 10 months ago
• microbiomedata / nmdc-metadata
  Managing metadata and policy around metadata in NMDC
  ☆2Updated last year
• workflow4metabolomics / tools-metabolomics
  Galaxy tools for metabolomics maintained by Workflow4Metabolomics
  ☆27Updated this week
• biswapriyamisra / metabolomics
  Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016
  ☆12Updated 5 years ago
• ncats / stitcher
  A stitching platform for InXight
  ☆15Updated last month
• MaayanLab / FAIRshake
  ☆10Updated 7 months ago
• waldronlab / GSEABenchmarkeR
  Reproducible GSEA Benchmarking
  ☆13Updated last week
• biothings / biothings.api
  BioThings API framework - Making high-performance API for biological annotation data
  ☆47Updated this week
• HumanCellAtlas / table-testing
  requirements, examples, and tests for expression matrix file formats
  ☆22Updated 6 years ago
• secimTools / SECIMTools
  A set of metabolomics tools for use in Galaxy
  ☆11Updated 2 years ago
• barupal / ChemRICH
  Chemical Similarity Enrichment analysis of metabolomics datasets
  ☆28Updated 9 months ago
• BMCV / galaxy-image-analysis
  Galaxy tools for image analysis
  ☆17Updated this week
• ISA-tools / biopy-isatab
  Python parser for ISAtab, a biological file format for experimental metadata
  ☆16Updated 8 years ago
• hubmapconsortium / portal-ui
  HuBMAP Data Portal front end
  ☆13Updated this week
• broadinstitute / gene-hints
  Discoverability for gene search
  ☆12Updated 2 years ago
• biocommons / eutils
  simplified searching, fetching, and parsing records from NCBI using their E-utilities interface
  ☆60Updated 10 months ago
• elixir-europe / biohackathon-projects-2023
  Project code for BioHackathon Europe 2023.
  ☆18Updated 8 months ago
• oncodash / oncodash
  Clinical oncology tumor board decision support system made by the Decider project.
  ☆13Updated 3 months ago
• alexandrovteam / SpaceM
  ☆15Updated 8 months ago
• hammerlab / t-cell-relation-extraction
  Literature mining for T cell relations
  ☆23Updated 2 years ago