Alternatives and similar repositories for WGFormer

Users that are interested in WGFormer are comparing it to the libraries listed below

• FanmengWang / PolyConf
  [ICML2025] The official implementation of "PolyConf: Unlocking Polymer Conformation Generation through Hierarchical Generative Models"
  ☆18Updated 2 weeks ago
• FanmengWang / MPerformer
  [CIKM2023] The official implementation of "MPerformer: An SE(3) Transformer-based Molecular Perceptron"
  ☆20Updated 7 months ago
• O-GNN / O-GNN
  ☆13Updated 2 years ago
• SDS-Lab / ROT-Pooling
  Learnable Global Pooling Layers Based on Regularized Optimal Transport (ROT)
  ☆16Updated last year
• chao1224 / MoleculeSDE
  A Group Symmetric Stochastic Differential Equation Model for Molecule Multi-modal Pretraining, ICML'23
  ☆32Updated last year
• FanmengWang / MMPolymer
  [CIKM2024] The official implementation of "MMPolymer: A Multimodal Multitask Pretraining Framework for Polymer Property Prediction"
  ☆23Updated last week
• syr-cn / ReLM
  [EMNLP 2023] ReLM: Leveraging Language Models for Enhanced Chemical Reaction Prediction.
  ☆21Updated last year
• ChenyuWang-Monica / DRAKES
  Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"
  ☆53Updated last month
• hits-mli / gafl
  Geometric Algebra Flow Matching (GAFL) for Protein Backbone Generation
  ☆12Updated last week
• syr-cn / SimSGT
  [NeurIPS 2023] "Rethinking Tokenizer and Decoder in Masked Graph Modeling for Molecules"
  ☆37Updated last year
• masa-ue / ProDifEvo-Refinement
  Evolutionary Algorithm with Diffusion Models for Protein Design
  ☆24Updated 4 months ago
• instadeepai / protein-structure-tokenizer
  Official implementation of "Learning the language of protein structures"
  ☆33Updated this week
• CRIPAC-DIG / tgm-dlm
  Code for AAAI24 paper Text-Guided Molecule Generation with Diffusion Language Model
  ☆25Updated 10 months ago
• wuhuaijin / EBMDock
  Official implementation for the paper "EBMDOCK: NEURAL PROBABILISTIC PROTEIN-PROTEIN DOCKING VIA A DIFFERENTIABLE ENERGY-BASED MODEL" (IC…
  ☆13Updated last year
• HICAI-ZJU / iMoLD
  Official implementation for Learning Invariant Molecular Representation in Latent Discrete Space (NeurIPS 2023)
  ☆21Updated last year
• DeepGraphLearning / SiamDiff
  Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)
  ☆40Updated last year
• smiles724 / Awesome-Diffusion-Models-for-Science
  ☆26Updated 2 years ago
• andrew-cr / discrete_flow_models
  Code for the paper https://arxiv.org/abs/2402.04997
  ☆78Updated last year
• ujk21 / dyn-informed
  ☆12Updated last year
• shichence / ProtSeed
  Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"
  ☆24Updated last year
• leojklarner / context-guided-diffusion
  Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design
  ☆38Updated 11 months ago
• HKUNLP / RSA
  Retrieved Sequence Augmentation for Protein Representation Learning
  ☆52Updated last year
• GT4SD / multitask_text_and_chemistry_t5
  Code for "Unifying Molecular and Textual Representations via Multi-task Language Modelling" @ ICML 2023
  ☆40Updated 9 months ago
• zaixizhang / FAIR
  NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement
  ☆48Updated last year
• BingSu12 / MoMu
  ☆24Updated 2 years ago
• language-plus-molecules / LPM-24-Dataset
  This repository contains information on the creation, evaluation, and benchmark models for the L+M-24 Dataset. L+M-24 will be featured as…
  ☆28Updated 5 months ago
• dqwang122 / EATLM
  Code for 'On Pre-trained Language Models For Antibody'
  ☆33Updated 2 years ago
• YangLing0818 / IRDiff
  [ICML 2024] Interaction-based Retrieval-augmented Diffusion Models for Protein-specific 3D Molecule Generation
  ☆28Updated 9 months ago
• IDEA-XL / InstructMol
  InstructMol: Multi-Modal Integration for Building a Versatile and Reliable Molecular Assistant in Drug Discovery (COLING 2025)
  ☆47Updated 6 months ago
• Vincentx15 / atom2D
  ☆12Updated 7 months ago