Alternatives and similar repositories for AnalyzeSkeleton

Users that are interested in AnalyzeSkeleton are comparing it to the libraries listed below

• path-openings / RORPO
  Ranking Operator Response of Path Openings
  ☆29Updated last month
• VolkerH / Lattice_Lightsheet_Deskew_Deconv
  Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data
  ☆26Updated 5 years ago
• billkarsh / Alignment_Projects
  Aligner for large scale serial section image data
  ☆16Updated 2 years ago
• Ajaxels / MIB2
  Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…
  ☆36Updated 4 months ago
• seung-lab / kimimaro
  Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
  ☆187Updated 2 weeks ago
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆57Updated 7 months ago
• khaledkhairy / EM_aligner
  A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.
  ☆15Updated 6 years ago
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆39Updated last month
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆59Updated 6 months ago
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆71Updated 3 years ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• JacobBumgarner / VesselVio
  An open-source application for the analysis and visualization of segmented vasculature datasets
  ☆128Updated last year
• SuperElastix / SuperElastix
  Official SuperElastix repository
  ☆88Updated 6 years ago
• JaneliaSciComp / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆78Updated 2 months ago
• tix209 / SOAX
  2D/3D biopolymer network extraction and quantification.
  ☆16Updated 5 months ago
• Vaa3D / Vaa3D_Wiki
  www.vaa3d.org
  ☆80Updated 7 years ago
• abria / TeraStitcher
  A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images
  ☆93Updated last year
• jni / skan
  Python module to analyse skeleton (thin object) images
  ☆139Updated 3 months ago
• DylanMuir / ReadImageJROI
  Matlab function to import ROIs from ImageJ
  ☆27Updated 6 years ago
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆76Updated 4 years ago
• SCIInstitute / fluorender
  FluoRender is an interactive tool for fluorescence microscopy data visualization and analysis
  ☆46Updated last week
• seung-lab / fastmorph
  Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.
  ☆19Updated 3 months ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆60Updated last month
• sbonaretti / pyKNEEr
  An image analysis workflow for open and reproducible research on femoral knee cartilage
  ☆33Updated last year
• fiji / Trainable_Segmentation
  Fiji library to perform image segmentation based on the Weka learning schemes
  ☆121Updated last year
• betaseg / cellsketch
  ☆11Updated last year
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆32Updated 2 years ago
• AdaptiveParticles / LibAPR
  Library for producing and processing on the Adaptive Particle Representation (APR).
  ☆51Updated last week
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆19Updated 4 years ago
• tlambert03 / LLSpy
  Lattice light-sheet post-processing utility.
  ☆30Updated 3 weeks ago