Alternatives and similar repositories for aptasuite

Users that are interested in aptasuite are comparing it to the libraries listed below

• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆44Updated last week
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆77Updated 2 weeks ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year
• ViennaRNA / forna
  Create force-directed graphs of RNA secondary structures.
  ☆110Updated 5 years ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆108Updated 3 months ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated 4 years ago
• Lattice-Automation / primers
  A PCR primer tool for DNA assembly flows
  ☆34Updated last year
• reynoldsk / pySCA
  A python implementation of the Statistical Coupling Analysis (SCA)
  ☆25Updated 6 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆53Updated 2 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆43Updated 3 weeks ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆110Updated 5 years ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆36Updated 4 years ago
• SBRG / Protein_ML
  Machine learning workflows for analyzing high-throughput protein data
  ☆26Updated 9 years ago
• proteinevolution / Toolkit
  The MPI Bioinformatics Toolkit
  ☆69Updated 4 months ago
• hmdlab / raptgen
  ☆26Updated 2 years ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆50Updated last year
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆21Updated 6 years ago
• cusbg / traveler
  Template-based RNA secondary structure visualization
  ☆26Updated last year
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year
• crowelab / PyIR
  Immunoglobulin and T-Cell receptor rearrangement software
  ☆50Updated 2 years ago
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆66Updated 2 years ago
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆55Updated 9 months ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆99Updated last year
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated 2 months ago
• eternagame / draw_rna
  Draw RNA secondary structures in python.
  ☆49Updated 5 months ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆56Updated last year
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆63Updated 6 months ago
• ebi-uniprot / ProtVista
  A BioJS viewer for protein sequence features
  ☆51Updated 3 years ago
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆94Updated last year
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆54Updated 6 years ago