Alternatives and similar repositories for aptasuite

Users that are interested in aptasuite are comparing it to the libraries listed below

• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆42Updated 3 weeks ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆69Updated 2 years ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆96Updated 8 months ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆50Updated last week
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆51Updated 10 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆40Updated last week
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆34Updated 7 months ago
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆33Updated 2 months ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year
• reynoldsk / pySCA
  A python implementation of the Statistical Coupling Analysis (SCA)
  ☆25Updated 5 years ago
• crowelab / PyIR
  Immunoglobulin and T-Cell receptor rearrangement software
  ☆49Updated last year
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆28Updated 7 years ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆40Updated last year
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆87Updated last year
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆79Updated last year
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆40Updated 6 months ago
• hmdlab / raptgen
  ☆25Updated last year
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆48Updated 5 years ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆73Updated 2 weeks ago
• Abalign / Abalign
  A visualization software for antibody multi sequence alignment
  ☆18Updated last year
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆57Updated 7 months ago
• Roestlab / PythonProteomics
  A collection of available Python tools for Proteomics analysis
  ☆56Updated 6 years ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 3 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆43Updated 2 years ago
• GreiffLab / immuneSIM
  ☆38Updated last year
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆64Updated last year
• zzz2010 / 5UTR_Optimizer
  Code for 5UTR project
  ☆24Updated 2 years ago
• eternagame / draw_rna
  Draw RNA secondary structures in python.
  ☆48Updated this week
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆109Updated 2 years ago
• mikessh / migmap
  HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
  ☆52Updated 8 months ago