Alternatives and similar repositories for aptasuite

Users that are interested in aptasuite are comparing it to the libraries listed below

• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆104Updated 2 months ago
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆43Updated 2 months ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆98Updated last year
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆42Updated this week
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆52Updated 3 weeks ago
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆66Updated last year
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆75Updated 3 months ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated 3 years ago
• Lattice-Automation / primers
  A PCR primer tool for DNA assembly flows
  ☆33Updated last year
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆62Updated 5 months ago
• ViennaRNA / forna
  Create force-directed graphs of RNA secondary structures.
  ☆108Updated 5 years ago
• Roestlab / PythonProteomics
  A collection of available Python tools for Proteomics analysis
  ☆61Updated 6 years ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆53Updated 6 years ago
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆152Updated 5 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆45Updated 2 years ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆16Updated last month
• ntranoslab / esm-variants
  ☆80Updated 2 years ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆56Updated last year
• crowelab / PyIR
  Immunoglobulin and T-Cell receptor rearrangement software
  ☆50Updated last year
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated last month
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆35Updated 11 months ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆42Updated last year
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆86Updated this week
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆54Updated 7 months ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆109Updated 4 years ago
• eternagame / draw_rna
  Draw RNA secondary structures in python.
  ☆49Updated 4 months ago
• openvax / mhcflurry
  Peptide-MHC I binding affinity prediction
  ☆218Updated 5 months ago
• smolkelab / promoter_design
  Promoter activity measurement and modeling; artificial promoter design and testing
  ☆13Updated 2 years ago
• zzz2010 / 5UTR_Optimizer
  Code for 5UTR project
  ☆25Updated 2 years ago