aartikrish / de-novo-antibioticsLinks
This is the GitHub repository accompanying Krishnan, Anahtar, Valeri, et al., 2025
☆34Updated 6 months ago
Alternatives and similar repositories for de-novo-antibiotics
Users that are interested in de-novo-antibiotics are comparing it to the libraries listed below
Sorting:
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆35Updated 2 years ago
- Code for deep learning guided design of dynamic proteins☆31Updated last year
- ☆39Updated last year
- ☆27Updated 4 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.☆42Updated last year
- A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design☆19Updated 10 months ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated 5 months ago
- Metrics for our protein design competitions.☆35Updated last year
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆26Updated 7 months ago
- ☆32Updated 4 months ago
- ☆17Updated last year
- Learning Binding Affinities via Fine-tuning of Protein and Ligand Language Models☆33Updated last year
- High-throughput framework for running molecular simulations for METL☆22Updated 3 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆58Updated 2 months ago
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆47Updated last month
- ☆26Updated 4 months ago
- ☆22Updated 8 months ago
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆13Updated last year
- PepFun 2.0: improved protocols for the analysis of natural and modified peptides☆26Updated 2 years ago
- MEGADOCK on Google Colaboratory☆20Updated 2 years ago
- Material to run the HADDOCK antibody-antigen modelling protocol☆23Updated 3 months ago
- ☆22Updated last month
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Updated 2 years ago
- ☆34Updated 2 years ago
- ☆27Updated 2 weeks ago
- Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning☆22Updated 9 months ago
- scripts to find PBD structures for cancer driver proteins☆31Updated 2 weeks ago
- Transformer Based Language Model for Peptide Property Prediction☆48Updated last year
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆22Updated 9 months ago