aartikrish / de-novo-antibioticsLinks
This is the GitHub repository accompanying Krishnan, Anahtar, Valeri, et al., 2025
☆35Updated 7 months ago
Alternatives and similar repositories for de-novo-antibiotics
Users that are interested in de-novo-antibiotics are comparing it to the libraries listed below
Sorting:
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆35Updated 2 years ago
- ☆27Updated 4 months ago
- PepFun 2.0: improved protocols for the analysis of natural and modified peptides☆26Updated 2 years ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- ☆39Updated last year
- ☆13Updated 8 months ago
- Code for deep learning guided design of dynamic proteins☆31Updated last year
- ☆31Updated 5 months ago
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆48Updated 2 months ago
- A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design☆19Updated 11 months ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆28Updated 3 years ago
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆26Updated 7 months ago
- The official codebase of peptidy, a peptide processing tool for machine learning.☆36Updated 8 months ago
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆13Updated last year
- Learning Binding Affinities via Fine-tuning of Protein and Ligand Language Models☆34Updated last year
- DeepSP is an antibody-specific surrogate CNN model that can generate 30 spatial properties of an antibody solely based on their sequences…☆18Updated 5 months ago
- ☆21Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆77Updated 2 months ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆34Updated last year
- ☆53Updated last month
- Transformer Based Language Model for Peptide Property Prediction☆48Updated last year
- Code for running BinderFlow☆56Updated last month
- ☆22Updated 9 months ago
- Metrics for our protein design competitions.☆35Updated last year
- scripts to find PBD structures for cancer driver proteins☆31Updated last month
- ☆22Updated last year
- This repository contains scripts, data and jupyter notebooks used to produce the evaluation results in the BioPhi 2021 publication☆17Updated 3 years ago
- A Unified Approach to Protein Engineering☆41Updated last year
- Efficient manipulation of protein structures in Python☆61Updated 3 months ago
- Material to run the HADDOCK antibody-antigen modelling protocol☆23Updated 3 months ago