New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community
☆60Dec 3, 2025Updated 9 months ago
Alternatives and similar repositories for RCy3
Users that are interested in RCy3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R/shiny widget for cytoscape.js☆98Aug 6, 2024Updated 2 years ago
- Update RCytoscape to work for Cytoscape 3.0 and higher using CyREST☆16Feb 3, 2018Updated 8 years ago
- Core App: REST API module for Cytoscape☆31Jul 31, 2025Updated last year
- Collection of scripts that include programmatic io and control of Cytoscape☆92Jun 30, 2026Updated 2 months ago
- Cytoscape interface to STRING and STITCH☆11May 9, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Network visualization webapp.☆14Mar 6, 2023Updated 3 years ago
- The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.☆37Oct 7, 2024Updated last year
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10May 17, 2017Updated 9 years ago
- Cytoscape App Store web application code☆20Aug 27, 2026Updated last week
- Cytoscape.js API support in JS, Python, and R Jupyter kernels☆10Nov 11, 2017Updated 8 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆33Mar 1, 2019Updated 7 years ago
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆12May 10, 2026Updated 3 months ago
- Cytoscape 3 implementation bundles.☆43Aug 18, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- GitHub pages for GPML-Repo☆12Updated this week
- ☆15Aug 17, 2023Updated 3 years ago
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated 2 years ago
- Dynamic Programming implemented in Rcpp. Includes example partition and out of sample fitting applications.☆16Aug 20, 2023Updated 3 years ago
- ☆28Jul 18, 2024Updated 2 years ago
- ☆14Nov 16, 2021Updated 4 years ago
- Example R script to use Cytoscape via RESTful API module.☆28Apr 22, 2019Updated 7 years ago
- Recurrent Variational Auto gene encoder☆19Jan 12, 2023Updated 3 years ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Base R vs. Tidyverse: a cookbook☆10Jan 2, 2020Updated 6 years ago
- Python library for calling Cytoscape Automation via CyREST☆87Feb 3, 2026Updated 7 months ago
- This is the ensembldb development repository.☆35Jun 6, 2026Updated 2 months ago
- ☆23Sep 20, 2022Updated 3 years ago
- Materials and scripts for building cell type encyclopedia table☆20Mar 16, 2026Updated 5 months ago
- A Cytoscape.js extension for the hierarchical clustering algorithm☆10Jul 26, 2017Updated 9 years ago
- An R/Bioconductor package to identify higher-order molecular phenotypes☆19Jan 15, 2024Updated 2 years ago
- An R-package for estimating population trends from count survey data.☆11Nov 23, 2023Updated 2 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Mar 7, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- data processing for MS-based metabolomics☆15May 28, 2026Updated 3 months ago
- phylogenetic networks using ggplot2 and ggtree☆13Dec 24, 2024Updated last year
- Differential Expression with Capture Efficiency adjustmeNT☆15Jan 3, 2023Updated 3 years ago
- generalized liner mixed model on rstan using glmer-style (lme4) formulas.☆12Jan 12, 2016Updated 10 years ago
- Spectral entropy for mass spectrometry data.☆39Jul 7, 2026Updated last month
- ☆19Oct 27, 2021Updated 4 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆16Aug 17, 2023Updated 3 years ago