MSU ProFlex (formerly called FIRST) predicts the rigid and flexible regions in a protein structure, given a Protein Data Bank (PDB) file including hydrogen atoms.
☆10Apr 16, 2022Updated 3 years ago
Alternatives and similar repositories for ProFlex
Users that are interested in ProFlex are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Sep 26, 2025Updated 6 months ago
- ☆17May 15, 2025Updated 11 months ago
- ☆12Jul 30, 2019Updated 6 years ago
- Tachyon library, written by John Stone☆14Sep 5, 2019Updated 6 years ago
- ☆12Mar 21, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆14Jun 30, 2024Updated last year
- This is an old archived repository that we keep for our records. Please use recent GENESIS repository and do not use this one.☆11Sep 15, 2022Updated 3 years ago
- ☆12Sep 21, 2023Updated 2 years ago
- Prediction of Antibody CDR and protein loop flexibility☆17Sep 17, 2025Updated 6 months ago
- DSSPparser is an easy tool to parse dssp file, and can transform PDB format file to dssp format file by xssp,also support the tansfrom be…☆13Sep 20, 2022Updated 3 years ago
- Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides …☆13Feb 25, 2025Updated last year
- Agent-based modelling tool for bacterial populations in systems and synthetic biology☆15Oct 18, 2021Updated 4 years ago
- a lightweight distogram-prediction model trained via contrastive learning☆14Dec 26, 2025Updated 3 months ago
- P2PXML: Deep Geometric Framework to Predict Antibody-Antigen Binding Affinity (Journal of Structural Biology)☆13Feb 24, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Please use OFFICIAL repo: https://github.com/alanwilter/acpype☆13Dec 30, 2019Updated 6 years ago
- All-atom inverse protein folding through discrete flow matching (ICML2025)☆24Mar 22, 2026Updated 3 weeks ago
- A simple but powerful VSCode extension for visualizing protein structures using the Molstar framework.☆35Oct 17, 2025Updated 5 months ago
- An accurate and efficient protein sequence design approach☆27Mar 16, 2025Updated last year
- A bridge between Biotite and OpenMM☆15Mar 16, 2025Updated last year
- Julia interface to ViennaRNA for RNA structure prediction and analysis☆23Apr 16, 2024Updated last year
- MolTaut, a tool for the rapid generation of favorable states of drug-like molecules in water☆20Feb 1, 2023Updated 3 years ago
- Command line tool providing BOSS generated OPLS-AA/CM1A(-LBCC) parameters for organic molecules and ligands.☆11Oct 5, 2017Updated 8 years ago
- MIFit is a cross-platform interactive graphics application for molecular modeling, fitting, and refinement of protein structures from x-r…☆11Jun 12, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A cyclic peptide-protein complex dataset derived from AFDB.☆41Mar 17, 2026Updated 3 weeks ago
- AutoCorrelation of Pharmacophore Features☆15Mar 6, 2023Updated 3 years ago
- Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module☆23Jan 27, 2022Updated 4 years ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆86Dec 3, 2025Updated 4 months ago
- Statistical Analysis of Docking Results and Scoring functions☆21Feb 22, 2026Updated last month
- 这里收集整理最近两年大厂多篇真实面经,整理出一批高频面试题,其中包括腾讯,阿里,字节跳动,百度,京东,美团等一线大厂。☆16Jun 17, 2022Updated 3 years ago
- Repo of AntiBMPNN project for antibody sequence design.☆34May 28, 2025Updated 10 months ago
- ZDOCK predictions and PDB structures in C++ and Python☆14Jan 1, 2024Updated 2 years ago
- ☆11Aug 19, 2025Updated 7 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An extra search package☆26Apr 12, 2023Updated 3 years ago
- Protocols and tools to run (automated) atomistic simulations of enzyme-ligand systems☆21Oct 11, 2021Updated 4 years ago
- Shape-based alignment of molecules using 3D point-based representation☆23Apr 8, 2026Updated last week
- A program fror inter-protein contact prediction from structures of interacting proteins☆21Jun 1, 2024Updated last year
- A deep reinforcement learning library for conformer generation.☆20Apr 15, 2024Updated 2 years ago
- pyMBE provides tools to facilitate building up molecules with complex architectures in the Molecular Dynamics software ESPResSo. For an…☆13Mar 20, 2026Updated 3 weeks ago
- faster docking☆21Apr 7, 2021Updated 5 years ago