☆19Oct 23, 2025Updated 4 months ago
Alternatives and similar repositories for teaching
Users that are interested in teaching are comparing it to the libraries listed below
Sorting:
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Feb 3, 2021Updated 5 years ago
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated 4 months ago
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13May 18, 2022Updated 3 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Dec 18, 2022Updated 3 years ago
- ☆10Sep 30, 2025Updated 5 months ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆23Updated this week
- Examples on INLA within MCMC☆12May 15, 2017Updated 8 years ago
- Introductory tutorial on the Stan language☆22Sep 9, 2024Updated last year
- Survival Extrapolation With a Flexible Parametric Model and External Data☆12Feb 18, 2026Updated last week
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 10 years ago
- An R package to help assess the sensitivity of a Bayesian model (fitted with Stan) to the specification of its likelihood and priors☆11Apr 8, 2025Updated 10 months ago
- A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…☆63Updated this week
- Simulate infectious disease transmission with contact tracing☆17Updated this week
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆17Oct 31, 2024Updated last year
- R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility☆15Jan 1, 2026Updated 2 months ago
- Materials for intro to Bayesian models☆16Jun 25, 2024Updated last year
- Short course on parametric survival analysis☆15Nov 22, 2024Updated last year
- Repo for code for "Unrepresentative Surveys Significantly Overestimate Vaccine Uptake in the US"☆15Dec 18, 2021Updated 4 years ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 2 months ago
- Collection of slide decks☆15Dec 25, 2024Updated last year
- Talk for RLadies Johannesburg & Tunis☆16Jan 14, 2021Updated 5 years ago
- My notes and work for the Bayesian Data Analysis course taught by Aki Vehtari.☆18Oct 29, 2022Updated 3 years ago
- ☆44Aug 19, 2025Updated 6 months ago
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆21Sep 1, 2025Updated 6 months ago
- Material for a course on (intermediate) Bayesian regression modeling☆22Mar 27, 2025Updated 11 months ago
- Tutorials on Stan for Bayesian causal inference☆19Jun 14, 2025Updated 8 months ago
- R package for response-surface methodology☆18Mar 24, 2025Updated 11 months ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17May 9, 2024Updated last year
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆20Updated this week
- Workshop on hhh4 and the endemic-epidemic framework☆18Oct 13, 2022Updated 3 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Dec 9, 2023Updated 2 years ago
- ☆15Jan 12, 2026Updated last month
- Introduction to simulation of randomized controlled trials in R☆26May 13, 2022Updated 3 years ago
- ☆23Jul 8, 2021Updated 4 years ago
- StanCon Connect 2022 space and time☆24Nov 10, 2022Updated 3 years ago
- Fast viral consensus genome reconstruction☆25Feb 5, 2026Updated 3 weeks ago
- ☆23Jun 6, 2025Updated 8 months ago
- ☆30Feb 18, 2026Updated last week
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago