ChrisHIV / teaching
☆19Updated last week
Alternatives and similar repositories for teaching:
Users that are interested in teaching are comparing it to the libraries listed below
- Disease outbreak reconstruction from epidemiological and genetic data☆32Updated 7 months ago
- Molecular Epidemiology of Viruses in R☆19Updated 9 years ago
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 5 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated 2 months ago
- Utilities and distributions for (birth-death) skyline models.☆10Updated 5 years ago
- Tools for evolutionary forecasting☆11Updated 3 weeks ago
- Pathogen evolution, selection and immunity☆45Updated last year
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆21Updated this week
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆47Updated this week
- R package to run BEAST2☆11Updated last week
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆20Updated 2 years ago
- R tools for posterior analyses using BEAST☆20Updated 6 years ago
- ☆11Updated 2 months ago
- An Amazing Shiny App☆17Updated 3 years ago
- R package for statistical inference of spatiotemporal partially observed Markov processes☆11Updated 4 months ago
- This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions f…☆63Updated 10 months ago
- A textbook for phylogenetic comparative methods.☆43Updated 5 years ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 3 weeks ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Updated 5 years ago
- phylogenetic networks using ggplot2 and ggtree☆11Updated 3 years ago
- Analysis of Phylogenetics and Evolution☆65Updated 2 weeks ago
- Racmacs R package for performing antigenic cartography☆21Updated 9 months ago
- ggplot2-style plots with base R graphics☆69Updated 9 months ago
- STAMPS 2018 course☆16Updated 6 years ago
- Class materials for BIOST 509☆60Updated 5 years ago
- NBZIMM (Negative Binomial and Zero-Inflated Mixed Models)☆33Updated 10 months ago
- scatter pie plot☆62Updated 3 months ago
- babette is an R package to work with BEAST2☆45Updated last week
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Updated 2 years ago
- Integral analysis of diversity based on Hill numbers☆11Updated 4 years ago