☆20Jun 4, 2026Updated 4 months ago
Alternatives and similar repositories for teaching
Users that are interested in teaching are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Feb 3, 2021Updated 5 years ago
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated last year
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Dec 18, 2022Updated 3 years ago
- Introductory tutorial on the Stan language☆23Sep 9, 2024Updated 2 years ago
- ☆10Sep 30, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13Aug 4, 2026Updated 2 months ago
- Materials for intro to Bayesian models☆16Jun 25, 2024Updated 2 years ago
- An R package for Bayes Linear emulation and history matching.☆19Aug 11, 2026Updated 2 months ago
- Read contamination removal☆24Jan 24, 2024Updated 2 years ago
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆21Updated this week
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆17Oct 31, 2024Updated last year
- R package for real-time Rt estimation with penalized splines☆16Jan 12, 2026Updated 9 months ago
- R script for visualising patient ward movements as timelines☆13May 13, 2022Updated 4 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆19May 9, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆17Mar 30, 2026Updated 6 months ago
- Sequences from HIV Easily Reconstructed☆29May 3, 2024Updated 2 years ago
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- Examples on INLA within MCMC☆12May 15, 2017Updated 9 years ago
- FAVITES (FrAmework for VIral Transmission and Evolution Simulation)☆40Nov 11, 2023Updated 2 years ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆30Updated this week
- Survival Extrapolation With a Flexible Parametric Model and External Data☆13Mar 10, 2026Updated 7 months ago
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated 2 months ago
- R package of functions linking R to the threejs 3D plotting engine☆14Jan 28, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…☆67Oct 1, 2026Updated 2 weeks ago
- Tutorials on Stan for Bayesian causal inference☆19Jun 14, 2025Updated last year
- R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility☆15Mar 26, 2026Updated 6 months ago
- Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.☆15Dec 11, 2024Updated last year
- Simulate infectious disease transmission with contact tracing☆18Oct 5, 2026Updated last week
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆21Updated this week
- Fast viral consensus genome reconstruction☆27Sep 16, 2026Updated 3 weeks ago
- R tools for performing ageing focussed analyses using matrix population models.☆12Aug 3, 2026Updated 2 months ago
- ☆10Jul 25, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆23Dec 9, 2023Updated 2 years ago
- A library of MATLAB functions for visualization, processing, and analysis of output from Bayesian models fit with Stan.☆10Dec 17, 2021Updated 4 years ago
- Consensus sequences for each Pango lineage☆24Jun 27, 2025Updated last year
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆140Oct 5, 2026Updated last week
- Inference of putative transmission phylogenetic clusters☆13Oct 13, 2020Updated 6 years ago
- A small program that glues together other programs allowing a user to input a codon alignment in FASTA format and produce an annotated ph…☆19Jan 14, 2015Updated 11 years ago
- Useful R snippets that I want to remember☆12Jun 18, 2024Updated 2 years ago