Alternatives and similar repositories for teaching

Users that are interested in teaching are comparing it to the libraries listed below

• reconhub / outbreaker2
  Disease outbreak reconstruction from epidemiological and genetic data
  ☆35Updated 10 months ago
• adrian-lison / EpiSewer
  An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.
  ☆22Updated this week
• thibautjombart / OutbreakTools
  Basic Tools for the Analysis of Disease Outbreaks
  ☆12Updated 5 years ago
• CDCgov / wastewater-informed-covid-forecasting
  Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
  ☆49Updated this week
• blab / evofr
  Tools for evolutionary forecasting
  ☆13Updated last week
• ekenah / TranStat
  An R package for the analysis of infectious disease transmission data
  ☆10Updated 3 years ago
• sdwfrost / mevr-course-2016
  Molecular Epidemiology of Viruses in R
  ☆19Updated 9 years ago
• nyiuab / NBZIMM
  NBZIMM (Negative Binomial and Zero-Inflated Mixed Models)
  ☆36Updated last year
• ArtPoon / ggfree
  ggplot2-style plots with base R graphics
  ☆70Updated last week
• daijiang / hillR
  An R pakage to calculate diversity through Hill Numbers
  ☆34Updated last year
• epinowcast / epinowcast
  Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…
  ☆62Updated this week
• ericgoolsby / Rphylopars
  Phylogenetic Comparative Tools for Missing Data and Within-Species Variation
  ☆32Updated 2 years ago
• adw96 / biost509
  Class materials for BIOST 509
  ☆59Updated 5 years ago
• tomwenseleers / LineageExplorer
  Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…
  ☆25Updated 2 years ago
• paternogbc / sensiPhy
  R package to perform sensitivity analysis for comparative methods
  ☆14Updated 5 years ago
• epiverse-trace / epiparameter
  R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…
  ☆35Updated 2 weeks ago
• ropensci / beastier
  R package to run BEAST2
  ☆11Updated 2 months ago
• seroanalytics / serosolver
  Inference framework for serological data
  ☆18Updated 2 weeks ago
• WHO-Collaboratory / collaboratory-epiparameter-community
  ☆41Updated last month
• mrc-ide / reactidd
  This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…
  ☆17Updated last year
• KlausVigo / tanggle
  phylogenetic networks using ggplot2 and ggtree
  ☆11Updated 3 weeks ago
• riffomonas / minimalR
  ☆22Updated last year
• FukamiLab / BIO202
  Biology 202 Course Website
  ☆18Updated 4 years ago
• daijiang / phyr
  Functions for phylogenetic analyses
  ☆35Updated last year
• CDCgov / ww-inference-model
  An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …
  ☆25Updated 7 months ago
• SchlossLab / new_project
  ☆18Updated 4 years ago
• simon-smart88 / shinyscholar
  A template for creating modular shiny applications that meet academic standards and are reproducible
  ☆28Updated last month
• dicook / SISBID
  Materials from this repo are best viewed using the web site listed below
  ☆16Updated this week
• lukejharmon / pcm
  A textbook for phylogenetic comparative methods.
  ☆44Updated 5 years ago
• CenterForStatistics-UGent / RCM
  A model-based visualization method for microbiome data
  ☆16Updated 2 years ago