Alternatives and similar repositories for GenomePrep:

Users that are interested in GenomePrep are comparing it to the libraries listed below

• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆157Updated last year
• ga4gh / benchmarking-tools
  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
  ☆203Updated 4 years ago
• 0xTCG / aldy
  Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
  ☆62Updated last week
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆55Updated this week
• zwdzwd / transvar
  TransVar - multiway annotator for precision medicine
  ☆125Updated 2 years ago
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆79Updated last week
• imgag / ngs-bits
  Short-read and long-read sequencing tools for diagnostics
  ☆158Updated last week
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆74Updated 5 years ago
• freeseek / score
  Tools to work with GWAS-VCF summary statistics files
  ☆118Updated 6 months ago
• ACEnglish / truvari
  Structural variant toolkit for VCFs
  ☆354Updated this week
• SBIMB / StellarPGx
  Calling star alleles in highly polymorphic pharmacogenes (e.g. CYP450 genes) by leveraging genome graph-based variant detection.
  ☆33Updated 3 weeks ago
• lgmgeo / AnnotSV
  Annotation and Ranking of Structural Variation
  ☆252Updated last month
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• imgag / megSAP
  a Medical Genetics Sequence Analysis Pipeline
  ☆82Updated this week
• Illumina / Nirvana
  The nimble & robust variant annotator
  ☆178Updated last year
• PharmGKB / PharmCAT
  The Pharmacogenomic Clinical Annotation Tool
  ☆131Updated last week
• WGLab / InterVar
  A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
  ☆193Updated last year
• brentp / vcfanno
  annotate a VCF with other VCFs/BEDs/tabixed files
  ☆375Updated last year
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆88Updated 3 weeks ago
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆73Updated 2 weeks ago
• WGLab / Phen2Gene
  Phenotype driven gene prioritization for HPO
  ☆45Updated 3 years ago
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆97Updated 11 months ago
• Illumina / DRAGMAP
  DRAGEN open-source mapper
  ☆171Updated last year
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆64Updated 3 weeks ago
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆124Updated 5 years ago
• gatk-workflows / gatk4-germline-snps-indels
  Workflows for germline short variant discovery with GATK4
  ☆135Updated 3 years ago
• zstephens / neat-genreads
  NEAT read simulation tools
  ☆98Updated 2 years ago
• brentp / jigv
  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
  ☆126Updated last year
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆113Updated 4 months ago
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆30Updated 3 months ago