Alternatives and similar repositories for variation-normalization

Users that are interested in variation-normalization are comparing it to the libraries listed below

• cancervariants / metakb
  Central repository for the VICC metakb web application
  ☆15Updated last week
• varfish-org / hgvs-rs
  A port of biocommons/hgvs to the Rust programming language
  ☆13Updated last week
• biocommons / anyvar
  [in development] Proof-of-Concept variation translation, validation, and registration service
  ☆13Updated this week
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 2 years ago
• biocommons / biocommons.seqrepo
  non-redundant, compressed, journalled, file-based storage for biological sequences
  ☆41Updated 2 months ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆57Updated this week
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆31Updated this week
• pcingola / SnpSift
  ☆38Updated 4 months ago
• mutalyzer / mutalyzer2
  HGVS variant nomenclature checker
  ☆98Updated 2 years ago
• stjude-rust-labs / chainfile
  A crate for working with genomics chain files.
  ☆11Updated 5 months ago
• biocommons / bioutils
  provides common tools and lookup tables used primarily by the hgvs and uta packages
  ☆22Updated 3 months ago
• ohsu-comp-bio / g2p-aggregator
  Associations of genomic features, drugs and diseases
  ☆48Updated 2 years ago
• sebriois / biomart
  Python biomart API
  ☆65Updated 2 years ago
• ababaian / bioFreelancers
  Freelance bioinformaticians directory
  ☆9Updated 2 years ago
• basespace / basespace-python-sdk
  BaseSpace Python SDK
  ☆37Updated 3 years ago
• pkerpedjiev / gene-citation-counts
  ☆33Updated 4 years ago
• GenEpiO / genepio
  The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information req…
  ☆21Updated 2 months ago
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆65Updated 3 months ago
• pepkit / peppy
  Project metadata manager for PEPs in Python
  ☆37Updated 8 months ago
• lcdb / lcdb-wf
  Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis
  ☆23Updated 2 months ago
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆50Updated 5 years ago
• independentdatalab / tf-aws-env-nf
  Terraform template to create AWS resources to execute jobs using nextflow
  ☆22Updated 2 years ago
• vatlab / varianttools
  software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis
  ☆31Updated 3 years ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆36Updated this week
• trytoolchest / toolchest-client-python
  Toolchest Python client
  ☆15Updated last year
• nextflow-io / nf-prov
  ☆30Updated last month
• research-software-ecosystem / content
  A metadata commons to store research software metadata
  ☆41Updated this week
• openvar / variantValidator
  Public repository for VariantValidator project
  ☆76Updated last week
• pmelsted / pizzly
  Fast fusion detection using kallisto
  ☆80Updated 2 weeks ago
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆88Updated 2 months ago