Alternatives and similar repositories for LiquidBrain_Scripts

Users that are interested in LiquidBrain_Scripts are comparing it to the libraries listed below

• sib-swiss / single-cell-training
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline
  ☆86Updated 3 weeks ago
• erilu / bulk-rnaseq-analysis
  A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…
  ☆118Updated 5 years ago
• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆59Updated last year
• CebolaLab / ATAC-seq
  Analysis pipeline for ATAC-seq data
  ☆85Updated 2 years ago
• hbctraining / Investigating-chromatin-biology-ChIPseq
  ☆101Updated 4 months ago
• Lindsey-LCFoong / WGCNA_tutorial
  A step-by-step tutorial for Weighted correlation network analysis (WGCNA)
  ☆72Updated 3 years ago
• hamidghaedi / Methylation_Analysis
  Comprehensive tutorial for differential methylation analysis, differential variability analysis and integrative analysis
  ☆29Updated last year
• zhangyuqing / ComBat-seq
  Batch effect adjustment based on negative binomial regression for RNA sequencing count data
  ☆201Updated 5 years ago
• IzarLab / CUIMC-NYP_COVID_autopsy_lung
  ☆43Updated 4 years ago
• hbctraining / Intro-to-bulk-RNAseq
  Introduction to bulk RNA-seq
  ☆136Updated 9 months ago
• hamidghaedi / RNA-seq-differential-expression
  Differential gene expression analysis on RNA-seq data
  ☆13Updated last year
• mdozmorov / Cancer_notes
  A continually expanding collection of cancer genomics notes and data
  ☆116Updated last week
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆100Updated 4 years ago
• sjdlabgroup / SAHMI
  ☆88Updated last year
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆133Updated last year
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆99Updated 2 years ago
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆162Updated 2 years ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆119Updated 6 months ago
• BCCHR-trainee-omics-group / StudyGroup
  This is where TOG houses all of its workshop scripts, as well as details on its upcoming workshops and seminars.
  ☆44Updated last year
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆92Updated last year
• al-mcintyre / merip_reanalysis_scripts
  Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
  ☆52Updated 6 years ago
• 10XGenomics / loupeR
  Convert Seurat objects to 10x Genomics Loupe files.
  ☆148Updated this week
• broadinstitute / 2020_scWorkshop
  Code and data repository for the 2020 physalia course on single cell RNA sequencing.
  ☆59Updated 5 years ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆65Updated last year
• hamidghaedi / Enrichment-Analysis
  From RNA-seq raw reads to enriched pathways by DEGs
  ☆33Updated last year
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆99Updated last year
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆173Updated 4 years ago
• BioSenior / ggVolcano
  The goal of `ggVolcano` is to help users make a beautiful volcano map more easily, including general volcano plot(`ggvolcano`), gradient …
  ☆93Updated 2 years ago
• naef-lab / dryR
  Differential RhythmicitY analysis in R is an R package that provides the statistical framework to assess differential rhythmicity of a ti…
  ☆19Updated this week
• singleron-RD / CeleScope
  Single Cell Analysis Pipelines
  ☆116Updated last week