brandonyph / LiquidBrain_Scripts
This folder ultimately should contains all my project shown in my Youtube channel.
☆34Updated 2 years ago
Alternatives and similar repositories for LiquidBrain_Scripts:
Users that are interested in LiquidBrain_Scripts are comparing it to the libraries listed below
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆89Updated last year
- This is where TOG houses all of its workshop scripts, as well as details on its upcoming workshops and seminars.☆41Updated 7 months ago
- My youtube programming scripts☆48Updated 2 weeks ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆90Updated 3 months ago
- The goal of `ggVolcano` is to help users make a beautiful volcano map more easily, including general volcano plot(`ggvolcano`), gradient …☆78Updated last year
- A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…☆74Updated 4 years ago
- ☆77Updated last year
- A step-by-step tutorial for Weighted correlation network analysis (WGCNA)☆64Updated 2 years ago
- SIB course on single cell transcriptomics by mostly using the Seurat pipeline☆79Updated last month
- Differential gene expression analysis on RNA-seq data☆11Updated 9 months ago
- Immunology-related bioinformatics data and tools☆71Updated 9 months ago
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆49Updated 5 years ago
- The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/☆89Updated 2 years ago
- Course materials for "Variants Annotate and Phenotype Analysis"☆22Updated 3 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 9 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆104Updated 6 months ago
- collection of notebooks with different cytoscape workflows☆49Updated last year
- ☆57Updated 8 months ago
- Updated implementation of the GSEA-P R application for modern R distributions☆94Updated 3 years ago
- ☆70Updated 3 years ago
- Easily install and load packages from the tidyomcis ecosystem☆63Updated 11 months ago
- R package for Pathway RespOnsive GENe activity inference☆98Updated 2 years ago
- Personal notes about work- and coding-related topics☆20Updated last year
- Comprehensive tutorial for differential methylation analysis, differential variability analysis and integrative analysis☆23Updated 8 months ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆170Updated 4 years ago
- ☆85Updated 7 months ago
- Create stacked violin plot☆45Updated 2 years ago
- The package wrapping the book, for deployment via the Bioconductor build system.☆84Updated 2 months ago
- ☆64Updated last year