brandonyph / LiquidBrain_Scripts
This folder ultimately should contains all my project shown in my Youtube channel.
☆33Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for LiquidBrain_Scripts
- A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…☆66Updated 4 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- This is where TOG houses all of its workshop scripts, as well as details on its upcoming workshops and seminars.☆41Updated 5 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆88Updated last year
- A continually expanding collection of cancer genomics notes and data☆101Updated 3 weeks ago
- Step-by-step analysis pipeline for RNA-seq data☆78Updated last year
- My youtube programming scripts☆39Updated this week
- A step-by-step tutorial for Weighted correlation network analysis (WGCNA)☆61Updated 2 years ago
- SIB course on single cell transcriptomics by mostly using the Seurat pipeline☆78Updated 3 weeks ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆89Updated last month
- Differential gene expression analysis on RNA-seq data☆11Updated 6 months ago
- A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME,…☆81Updated last month
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆72Updated 4 years ago
- ☆60Updated last year
- ☆40Updated 3 years ago
- Comprehensive tutorial for differential methylation analysis, differential variability analysis and integrative analysis☆19Updated 6 months ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆47Updated 7 months ago
- ☆74Updated 10 months ago
- Repository for Cibersortx☆51Updated 3 years ago
- ☆68Updated 2 years ago
- Updated implementation of the GSEA-P R application for modern R distributions☆94Updated 2 years ago
- ☆30Updated 2 years ago
- Analysis pipeline for ATAC-seq data☆38Updated last year
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 3 years ago
- Immunology-related bioinformatics data and tools☆69Updated 6 months ago
- Personal notes about work- and coding-related topics☆18Updated last year
- ☆95Updated last year
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆34Updated 9 months ago
- The goal of `ggVolcano` is to help users make a beautiful volcano map more easily, including general volcano plot(`ggvolcano`), gradient …☆71Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆93Updated 5 months ago