Alternatives and similar repositories for sars-like-cov

Users that are interested in sars-like-cov are comparing it to the libraries listed below

• NVIDIA-Genomics-Research / racon-gpu
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
  ☆17Updated 5 years ago
• LANL-Bioinformatics / EDGE
  EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
  ☆75Updated 2 months ago
• Novartis / peax
  Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…
  ☆69Updated 2 years ago
• jbloomlab / alignparse
  Align sequences and then parse features.
  ☆17Updated 3 weeks ago
• nextstrain / fauna
  RethinkDB database to support real-time virus analysis
  ☆34Updated this week
• rmenegaux / fastDNA
  ☆24Updated 4 years ago
• 3DGenomes / TADkit
  3D Genome Browser
  ☆32Updated 3 years ago
• ncbi / docker
  ☆53Updated 3 months ago
• pnnl / mercat
  MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
  ☆18Updated 2 years ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆66Updated 8 months ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆42Updated 5 years ago
• roblanf / sarscov2phylo
  Global phylogenies of SARS-CoV-2 sequences
  ☆85Updated 2 years ago
• ramzan1990 / sequence2vec
  ☆21Updated 8 years ago
• blab / ncov-phylodynamics
  Phylodynamic estimation of nCoV incidence and prevalence
  ☆19Updated 5 years ago
• kdm9 / SRApy
  SRA python tools
  ☆11Updated 4 years ago
• koonimaru / DeepGMAP
  Deep learning-based prediction of regulatory genome sequences
  ☆12Updated 5 years ago
• BIMSBbioinfo / pigx_sars-cov-2
  PiGx SARS-CoV-2 wastewater sequencing pipeline
  ☆18Updated 2 years ago
• etirouthier / keras_dna
  ☆26Updated 4 years ago
• nekrut / BMMB554
  Introduction to data driven life sciences
  ☆20Updated 4 months ago
• olgabot / abi2fastq
  abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ
  ☆11Updated 8 years ago
• brentp / pyfasta
  fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
  ☆88Updated 7 years ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆46Updated 9 years ago
• dnanexus / wdlTools
  WDL tools for parsing, type-checking, and more
  ☆27Updated 2 months ago
• ababaian / bioFreelancers
  Freelance bioinformaticians directory
  ☆10Updated 2 years ago
• josiahseaman / FluentDNA
  FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as …
  ☆69Updated 4 years ago
• GuipengLi / SharePathway
  a python package for KEGG pathway enrichment analysis with multiple gene lists.
  ☆38Updated 8 years ago
• epiviz / epiviz
  EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…
  ☆71Updated 2 years ago
• NeuroCSUT / ViraMiner
  CNN based classifier for detecting viral sequences among metagenomic contigs
  ☆34Updated 5 years ago
• NIH-HPC / singularity-examples
  example singularity definition files and demos
  ☆27Updated 7 years ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆52Updated last year