blab / sars-like-cov
This is a one-off Nextstrain build for SARS-like coronaviruses
☆82Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for sars-like-cov
- COVID-19 Diagnostic Processing Dashboard☆20Updated last year
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆64Updated 4 months ago
- exploratory and interactive microbiome analyses based on heatmaps☆27Updated last month
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Updated 4 years ago
- Genetics training camp☆21Updated 4 years ago
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆86Updated 6 years ago
- Global phylogenies of SARS-CoV-2 sequences☆86Updated last year
- Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.…☆21Updated last year
- Tools and utilities for running Dockerized metagenomics tools in the Cloud☆23Updated 5 years ago
- dsNickFury is for comparing a CRISPR target site against all other potential sites in a genome. Orchid is a package I'm developing to go…☆12Updated 6 years ago
- Infer selection pressures on features of amino acid CDR3 sequences.☆23Updated 7 months ago
- Deep learning for identifying cis-regulatory elements and other applications☆32Updated 8 years ago
- A repository for sharing information on available COVID-19 RNA-Seq datasets☆79Updated 2 years ago
- ☆83Updated 3 years ago
- The GenePattern Server web application☆36Updated last week
- Efficient handling of FASTQ files from Python☆50Updated 2 months ago
- Discovery of biological sequence motifs in R☆27Updated 5 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆43Updated last year
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆25Updated 4 years ago
- ☆23Updated 3 years ago
- Single-Cell RNA-seq pseudo-aligner☆50Updated 6 months ago
- ☆29Updated 4 months ago
- ☆80Updated 11 months ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated last year
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆35Updated 7 years ago
- Code for the analyses in the human reference interactome paper.☆26Updated last year
- SRAToolkit has been REPLACED - see README☆36Updated 8 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆43Updated 8 months ago