brennanaba / AbDataLinks
☆10Updated 4 years ago
Alternatives and similar repositories for AbData
Users that are interested in AbData are comparing it to the libraries listed below
Sorting:
- Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1☆37Updated 3 years ago
- pytorch implementation of trDesign☆45Updated 4 years ago
- To be a next-generation DL-based phenotype prediction from genome mutations.☆19Updated 4 years ago
- Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pyt…☆76Updated 4 years ago
- Implementation of Tranception, an attention network, paired with retrieval, that is SOTA for protein fitness prediction☆32Updated 3 years ago
- This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of …☆58Updated 3 years ago
- ☆34Updated 7 months ago
- Implementation of the Triangle Multiplicative module, used in Alphafold2 as an efficient way to mix rows or columns of a 2d feature map, …☆39Updated 4 years ago
- Implementation of Denoising Diffusion for protein design, but using the new Equiformer (successor to SE3 Transformers) with some addition…☆57Updated 2 years ago
- A repository with exploration into using transformers to predict DNA ↔ transcription factor binding☆88Updated 3 years ago
- ☆25Updated 3 years ago
- A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. …☆23Updated 2 years ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆98Updated 2 years ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆113Updated 4 years ago
- ☆34Updated 5 years ago
- Pytorch reimplementation of Molecule Attention Transformer, which uses a transformer to tackle the graph-like structure of molecules☆58Updated 5 years ago
- Implementation of Lie Transformer, Equivariant Self-Attention, in Pytorch☆97Updated 4 years ago
- Exploring the space of drug combinations to discover synergistic drugs using Active Learning☆24Updated last year
- Implementation of an Attention layer where each head can attend to more than just one token, using coordinate descent to pick topk☆47Updated 2 years ago
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Updated 4 years ago
- Graph neural network message passing reframed as a Transformer with local attention☆70Updated 2 years ago
- Pytorch implementation of a simple way to enable (Stochastic) Frame Averaging for any network☆51Updated last year
- My own attempt at a long context genomics model, leveraging recent advances in long context attention modeling (Flash Attention + other h…☆55Updated 2 years ago
- ☆134Updated 3 years ago
- reproduces experiments from "Grounding inductive biases in natural images: invariance stems from variations in data"☆17Updated last year
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆16Updated 3 years ago
- A Modular Architecture for Deep Learning Systems☆49Updated 6 months ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 3 years ago
- ☆15Updated 5 months ago
- ☆12Updated last year