genedisco / genedisco-starterLinks
The starter repository for submissions to the GeneDisco challenge for optimized experimental design in genetic perturbation experiments.
☆24Updated 3 years ago
Alternatives and similar repositories for genedisco-starter
Users that are interested in genedisco-starter are comparing it to the libraries listed below
Sorting:
- GeneDisco is a benchmark suite for evaluating active learning algorithms for experimental design in drug discovery.☆38Updated last year
- Exploring the space of drug combinations to discover synergistic drugs using Active Learning☆24Updated 10 months ago
- Starter repository for submissions to the CausalBench challenge for gene-gene graph inference from genetic perturbation experiments.☆30Updated 2 years ago
- ☆31Updated 2 years ago
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆25Updated last month
- Latent spaces for single cells☆21Updated last year
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆28Updated 2 years ago
- ☆38Updated 8 months ago
- Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)☆73Updated last year
- ☆19Updated 2 years ago
- ☆25Updated 2 years ago
- Code for CELL-E: Biological Zero-Shot Text-to-Image Synthesis for Protein Localization Prediction☆29Updated last year
- Deep Graph Mapper: Seeing Graphs through the Neural Lens☆58Updated last year
- ☆12Updated 2 years ago
- TLDRs for ML in Drug Discovery papers☆70Updated 2 years ago
- Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e…☆18Updated 3 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆38Updated 2 years ago
- Biological Network Integration using Convolutions☆62Updated last year
- Readings for "A Unified View of Relational Deep Learning for Drug Pair Scoring." (IJCAI 2022)☆95Updated 2 years ago
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆60Updated 2 weeks ago
- ☆43Updated 2 weeks ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆40Updated last year
- ☆16Updated 4 years ago
- ☆18Updated 3 years ago
- External repo for the EFAAR benchmarking paper☆20Updated last week
- Pacmed Labs experiments on uncertainty estimation, focusing on unbalanced tabular data and classification tasks.☆21Updated 4 years ago
- Code corresponding to the paper Diffusion Earth Mover's Distance and Distribution Embeddings☆36Updated 6 months ago
- Learning mutational semantics☆10Updated 4 years ago
- Learning with uncertainty for biological discovery and design☆34Updated 2 years ago
- Paper list for equivariant neural network☆10Updated 3 years ago