gamaleldin / TME

Related projects ⓘ

Alternatives and complementary repositories for TME

• gamaleldin / CFR
  This code package is for the Corrected-Fisher-Randomization (CFR) method. This method generates random surrogate data that preserves a sp…
  ☆10Updated 7 years ago
• anirgalgali / residual-dynamics
  Code for Galgali et al, 2023
  ☆11Updated last year
• lindermanlab / PPSeq.jl
  Neyman-Scott point process model to identify sequential firing patterns in high-dimensional spike trains
  ☆62Updated last year
• lfads / lfads-run-manager
  Matlab interface for Latent Factor Analysis via Dynamical Systems (LFADS)
  ☆50Updated 2 years ago
• MouseLand / stringer-pachitariu-et-al-2018a
  Recordings of 10k neurons during spontaneous behaviors
  ☆50Updated 7 months ago
• pillowlab / GLMspiketraintutorial_python
  ☆46Updated 2 years ago
• pillowlab / LNPfitting
  Linear-Nonlinear-Poisson (LNP) model fitting via Maximally-Informative-Dimensions (MID) / maximum likelihood
  ☆19Updated 6 years ago
• catniplab / vlgp
  Dimensionality reduction of spikes trains
  ☆48Updated 3 years ago
• aiweber / GLM_and_Izhikevich
  This repository contains code for (1) generating example neural responses from an Izhikevich model, and (2) fitting a GLM to neural respo…
  ☆12Updated last year
• fmastrogiuseppe / LowRank
  Supplementary code for the paper "Linking connectivity, dynamics and computations in low-rank recurrent neural networks" by F. Mastrogius…
  ☆32Updated 6 years ago
• bantin / jPCA
  jPCA for Neural Data Analysis in Python
  ☆44Updated last year
• davindicode / cosyne-2023-generative-models
  Notebooks from the workshop tutorial implementing and discussing a range of generative models commonly used in neuroscience.
  ☆39Updated last year
• snel-repo / autolfads-tf2
  A TensorFlow 2.0 implementation of Latent Factor Analysis via Dynamical Systems (LFADS) and AutoLFADS.
  ☆19Updated last year
• lyprince / lfads_demo
  Pytorch implementation of LFADS for demo at CAN workshop
  ☆19Updated 5 years ago
• davidzoltowski / ssmdm
  Recurrent state-space models for decision making
  ☆29Updated 2 years ago
• ahwillia / tensortools
  A very simple and barebones tensor decomposition library for CP decomposition a.k.a. PARAFAC a.k.a. TCA
  ☆33Updated last year
• nirum / jetplot
  🔋 Utilities for scientific python
  ☆20Updated 3 months ago
• marius10p / NeuralDataScienceCSHL2019
  Coding exercises for Neural Data Science at CSHL in 2019
  ☆28Updated 4 years ago
• mackelab / CorBinian
  CorBinian: A toolbox for modelling and simulating high-dimensional binary and count-data with correlations
  ☆19Updated 3 years ago
• MouseLand / EnsemblePursuit
  ☆9Updated 4 years ago
• arthur-pe / slicetca
  Library to perform Slice Tensor Component Analysis (sliceTCA)
  ☆36Updated last month
• egokcen / DLAG
  A dimensionality reduction framework for disentangling the flow of signals between populations of neurons
  ☆25Updated 2 years ago
• slinderman / pyglm
  Interpretable neural spike train models with fully-Bayesian inference algorithms
  ☆48Updated 6 years ago
• pillowlab / GLMspiketools
  Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).
  ☆35Updated 5 years ago
• timkimd / plnde
  Code for "Inferring Latent Dynamics Underlying Neural Population Activity via Neural Differential Equations"
  ☆9Updated 3 years ago
• aecker / gpfa
  Gaussian Process Factor Analysis
  ☆28Updated 9 years ago
• anne-urai / largescale_recordings
  Urai AE, Doiron B, Leifer AM & Churchland AK (2022) Large-scale neural recordings call for new insights to link brain and behavior. Natur…
  ☆18Updated 2 years ago
• lyprince / hierarchical_lfads
  Pytorch implementation of lfads, and hierarchical extension
  ☆26Updated 2 years ago
• BrainCOGS / HPC_manifolds
  Analysis of hippocampal activity in the towers task
  ☆18Updated 3 years ago
• int-brain-lab / ibllib
  IBL core shared libraries
  ☆61Updated this week