Alternatives and similar repositories for cellranger-aws-pipeline

Users that are interested in cellranger-aws-pipeline are comparing it to the libraries listed below

• aws-samples / aws-healthomics-tutorials
  ☆84Updated this week
• aws / amazon-genomics-cli
  ☆147Updated last year
• awslabs / aws-healthomics-tools
  ☆39Updated this week
• aws-samples / aws-genomics-workflows
  Genomics Workflows on AWS
  ☆147Updated 2 years ago
• awslabs / aws-parallelcluster-pipeline-gatk-quick-start
  ☆15Updated 5 years ago
• aws-samples / amazon-omics-webapp-integrations
  This project contains the webapp sample integrated with AWS HealthOmics, which allows users such as admin and bioinformaticians to operat…
  ☆19Updated 10 months ago
• aws-quickstart / quickstart-illumina-dragen
  AWS Quick Start Team
  ☆24Updated last year
• aws-samples / aws-gatk-recipe-nextflow-pipeline
  ☆11Updated 4 years ago
• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆71Updated 3 weeks ago
• awslabs / genomics-secondary-analysis-using-aws-step-functions-and-aws-batch
  This solution provides a framework for Next Generation Sequencing (NGS) genomics secondary-analysis pipelines using AWS Step Functions an…
  ☆39Updated last year
• Study-Tracker / Study-Tracker
  Study management software for research organizations.
  ☆26Updated last month
• openvax / neoantigen-vaccine-pipeline
  Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines
  ☆86Updated last month
• lynnlangit / TeamTeri
  Bioinformatics on GCP, AWS or Azure
  ☆59Updated last month
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆151Updated 8 months ago
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆84Updated 4 years ago
• aws-samples / amazon-omics-end-to-end-genomics
  ☆18Updated 2 years ago
• HussainAther / awesome-alternative-splicing
  Alternative splicing resource
  ☆57Updated 7 years ago
• bm2-lab / DeepCRISPR
  ☆68Updated 2 years ago
• lynnlangit / aws-for-bioinformatics
  AWS for Bioinformatics Researchers
  ☆181Updated 3 months ago
• ucscXena / xenaPython
  Python API for Xena Hub
  ☆53Updated 2 years ago
• broadinstitute / genomics-in-the-cloud
  Source code and related materials for the O'Reilly book
  ☆96Updated 3 years ago
• NIGMS / NIGMS-Sandbox
  Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NI…
  ☆80Updated 4 months ago
• sebriois / biomart
  Python biomart API
  ☆68Updated 2 years ago
• bigbio / nf-workflows
  Repository of Nextflow+BioContainers workflows
  ☆14Updated 4 years ago
• StanfordBioinformatics / Hummingbird
  Hummingbird: Efficient Performance Prediction for Executing Genomic Applications in the Cloud: https://doi.org/10.1093/bioinformatics/bta…
  ☆20Updated last year
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆33Updated 6 months ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆49Updated 2 years ago
• aehrc / VariantSpark
  machine learning for genomic variants
  ☆146Updated 2 weeks ago
• seqeralabs / nextflow-tutorial
  Nextflow training material for introductory tutorial
  ☆107Updated 3 years ago
• nextflow-io / rnaseq-nf
  A proof of concept of RNAseq pipeline
  ☆79Updated last week