Alternatives and similar repositories for cellranger-aws-pipeline

Users that are interested in cellranger-aws-pipeline are comparing it to the libraries listed below

• aws / amazon-genomics-cli
  ☆147Updated last year
• aws-samples / aws-healthomics-tutorials
  ☆79Updated last week
• awslabs / aws-healthomics-tools
  ☆33Updated this week
• aws-samples / aws-genomics-workflows
  Genomics Workflows on AWS
  ☆147Updated last year
• awslabs / aws-parallelcluster-pipeline-gatk-quick-start
  ☆15Updated 5 years ago
• aws-samples / aws-gatk-recipe-nextflow-pipeline
  ☆11Updated 4 years ago
• awslabs / genomics-secondary-analysis-using-aws-step-functions-and-aws-batch
  This solution provides a framework for Next Generation Sequencing (NGS) genomics secondary-analysis pipelines using AWS Step Functions an…
  ☆39Updated last year
• aws-quickstart / quickstart-illumina-dragen
  AWS Quick Start Team
  ☆24Updated 9 months ago
• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆69Updated 3 months ago
• ucscXena / xenaPython
  Python API for Xena Hub
  ☆53Updated 2 years ago
• sbslee / pypgx
  A Python package for pharmacogenomics (PGx) research
  ☆75Updated 5 months ago
• lynnlangit / aws-for-bioinformatics
  AWS for Bioinformatics Researchers
  ☆166Updated 10 months ago
• ohsu-comp-bio / g2p-aggregator
  Associations of genomic features, drugs and diseases
  ☆48Updated 2 years ago
• lwgray / pyEntrezId
  Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id
  ☆45Updated last year
• lynnlangit / TeamTeri
  Bioinformatics on GCP, AWS or Azure
  ☆57Updated last month
• broadinstitute / genomics-in-the-cloud
  Source code and related materials for the O'Reilly book
  ☆96Updated 2 years ago
• seqeralabs / nextflow-tutorial
  Nextflow training material for introductory tutorial
  ☆105Updated 3 years ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆98Updated 9 months ago
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆84Updated 4 years ago
• HussainAther / awesome-alternative-splicing
  Alternative splicing resource
  ☆56Updated 7 years ago
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆24Updated last month
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆32Updated 3 months ago
• inutano / chip-atlas
  ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser
  ☆74Updated 2 months ago
• boutroslab / CRISPRAnalyzeR
  CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens
  ☆82Updated 5 years ago
• NIGMS / NIGMS-Sandbox
  Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NI…
  ☆74Updated last month
• mikessh / vdjtools
  [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data
  ☆140Updated last year
• VCCRI / Falco
  A quick and flexible single-cell RNA-seq processing framework on the cloud
  ☆38Updated 5 years ago
• bigbioinformatics / r-programming-and-rnaseq-workshop
  ☆27Updated 4 years ago
• aws-samples / amazon-omics-webapp-integrations
  This project contains the webapp sample integrated with AWS HealthOmics, which allows users such as admin and bioinformaticians to operat…
  ☆19Updated 7 months ago
• broadinstitute / gnomad_methods
  Hail helper functions for the gnomAD project and Translational Genomics Group
  ☆96Updated this week