YanjieZe / SSR

Related projects ⓘ

Alternatives and complementary repositories for SSR

• ml4bio / e2efold
  pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"
  ☆109Updated 7 months ago
• HICAI-ZJU / InstructProtein
  Code and data for the ACL2024 paper "InstructProtein: Aligning Human and Protein Language via Knowledge Instruction".
  ☆11Updated 2 months ago
• dqwang122 / EATLM
  Code for 'On Pre-trained Language Models For Antibody'
  ☆30Updated last year
• elttaes / Revisiting-PLMs
  Exploring Evolution-aware & free protein language models as protein function predictors
  ☆60Updated last month
• lucidrains / tf-bind-transformer
  A repository with exploration into using transformers to predict DNA ↔ transcription factor binding
  ☆81Updated 2 years ago
• automl / learna
  End-to-end RNA Design using deep reinforcement learning
  ☆64Updated 2 years ago
• bozhenhhu / A-Review-of-pLMs-and-Methods-for-Protein-Structure-Prediction
  ☆37Updated last year
• GeomMolDesign / HMR
  Code for "Learning Harmonic Molecular Representations on Riemannian Manifold", ICLR, 2023
  ☆11Updated last year
• mxfold / mxfold2
  MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration
  ☆115Updated 3 weeks ago
• luost26 / diffab
  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
  ☆279Updated last year
• wengong-jin / RefineGNN
  ☆126Updated 2 years ago
• Westlake-DL / DL-Course-2024
  Official Repository for Westlake Deep Learning Course (2024)
  ☆15Updated 5 months ago
• WLYLab / PepFormer
  ☆12Updated 3 years ago
• Graph-and-Geometric-Learning / Frame-Averaging-Transformer
  Protein-Nucleic Acid Complex Modeling with Frame Averaging Transformer, NeurIPS2024
  ☆17Updated 3 weeks ago
• zhangch994 / CDPfold
  ☆10Updated 5 years ago
• automl / ProbTransformer
  Probabilistic Transformer: Modelling Ambiguities and Distributions for RNA Folding and Molecule Design
  ☆17Updated 3 months ago
• lucidrains / ddpm-ipa-protein-generation
  Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…
  ☆86Updated 2 years ago
• THUDM / MSAGPT
  MSAGPT
  ☆25Updated 5 months ago
• zqgao22 / HIGH-PPI
  ☆77Updated last year
• DeepGraphLearning / PEER_Benchmark
  PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)
  ☆82Updated last year
• mehdi1902 / RNA-secondary-structure-prediction-using-CNN
  Materials for "RNA secondary structure prediction with Convolutional Neural Networks" published in BMC Bioinformatics.
  ☆13Updated last year
• lucidrains / tr-rosetta-pytorch
  Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design
  ☆80Updated 3 years ago
• THUNLP-MT / MEAN
  This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.
  ☆87Updated last year
• yataobian / awesome-DrugAI
  Research repo for AI aided drug discovery, de novo drug development and related topics
  ☆34Updated 2 years ago
• biomed-AI / GraphPPIS
  ☆49Updated 3 months ago
• DeepGraphLearning / ProtST
  [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts
  ☆87Updated last year
• lucidrains / progen
  Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax
  ☆109Updated 3 years ago
• zjunlp / OntoProtein
  [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding
  ☆144Updated last year
• lucidrains / protein-bert-pytorch
  Implementation of ProteinBERT in Pytorch
  ☆153Updated 3 years ago