Alternatives and similar repositories for PepFormer:

Users that are interested in PepFormer are comparing it to the libraries listed below

• googleinterns / protein-embedding-retrieval
  ☆34Updated 4 years ago
• lvqiujie / Mol2Context-vec
  ☆13Updated 2 years ago
• NYXFLOWER / TIP
  TIP: Tri-graph Interaction Propagation model for Polypharmacy Side Effect Prediction (GRL@NeurIPS, 2019)
  ☆24Updated 2 years ago
• Shen-Lab / Drug-Combo-Generator
  Deep Generative Models for Drug Combination (Graph Set) Generation given Hierarchical Disease Network Embedding
  ☆30Updated last year
• tadorfer / nlprot
  NLP for Proteins - A paper collection
  ☆13Updated 4 years ago
• Ieremie / TransformerGO
  ☆17Updated 3 years ago
• hkmztrk / SMILESVecProteinRepresentation
  Source code for "A novel methodology on distributed representations of proteins using their interacting ligands"
  ☆27Updated 4 years ago
• kexinhuang12345 / SkipGNN
  SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks (Scientific Reports)
  ☆64Updated 4 years ago
• GeomMolDesign / HMR
  Code for "Learning Harmonic Molecular Representations on Riemannian Manifold", ICLR, 2023
  ☆11Updated last year
• futianfan / CORE
  CORE: Automatic Molecule Optimization using Copy & Refine Strategy (AAAI 2020)
  ☆16Updated last year
• binghong-ml / MolEvol
  Source code for ICLR 2021 paper: "Molecule Optimization by Explainable Evolution"
  ☆28Updated 3 years ago
• HYsxe / ACME
  Supplementary data for the ACME algorithm
  ☆23Updated 2 years ago
• cansyl / MDeePred
  Multi-Channel Deep Chemogenomic Modeling of Receptor-Ligand Binding Affinity Prediction for Drug Discovery
  ☆27Updated 3 years ago
• violet-sto / TGSA
  PyTorch implementation of "TGSA: Protein-Protein Association-Based Twin Graph Neural Networks for Drug Response Prediction with Similarit…
  ☆24Updated 3 years ago
• XuanLin1991 / DeepGS
  DeepGS: Deep Representation Learning of Graphs and Sequences for Drug-Target Binding Affinity Prediction (ECAI 2020)
  ☆26Updated 4 years ago
• mikejhuang / PhageProtVec
  Amino Acid Embedding Representation as Machine Learning Features
  ☆19Updated 6 years ago
• Tsedao / MultiRM
  [Nat. Commun.] Code for paper 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely …
  ☆28Updated 3 years ago
• FangpingWan / DeepCPI
  ☆15Updated 4 years ago
• HannesStark / protein-localization
  Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…
  ☆60Updated last year
• jiangyi01 / PHAT
  Explainable deep hypergraph learning modeling the peptide secondary structure prediction
  ☆11Updated last year
• ZhonghuiGu / HEAL
  ☆46Updated 5 months ago
• PaccMann / paccmann_predictor
  PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…
  ☆50Updated 9 months ago
• stamakro / GCN-for-Structure-and-Function
  Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"
  ☆39Updated last year
• snap-stanford / multiscale-interactome
  ☆65Updated last year
• papercode-for-cheung / DeepMGT-DTI
  ☆16Updated 3 years ago
• IBM / ReprogBERT
  Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"
  ☆23Updated last year
• XieResearchGroup / DeepREAL
  DeepREAL: A Deep Learning Powered Multi-scale Modeling Framework Towards Predicting Out-of-distribution Receptor Activity of Ligand Bindi…
  ☆10Updated 2 years ago
• BioinfoMachineLearning / DeepInteract
  A geometric deep learning pipeline for predicting protein interface contacts. (ICLR 2022)
  ☆63Updated 2 years ago
• psipred / FFPredGAN
  Improving protein function prediction with synthetic feature samples created by generative adversarial networks
  ☆22Updated 4 years ago
• xypan1232 / iDeepV
  iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.
  ☆10Updated 5 years ago