Materials for "RNA secondary structure prediction with Convolutional Neural Networks" published in BMC Bioinformatics.
☆14May 3, 2023Updated 3 years ago
Alternatives and similar repositories for RNA-secondary-structure-prediction-using-CNN
Users that are interested in RNA-secondary-structure-prediction-using-CNN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SSR: A Unifed Framework for Prediction in Secondary Structure of RNA. 整合了LinearFold, E2Efold, MXfold2算法,包含数据集,欢迎一键使用。☆10Dec 31, 2021Updated 4 years ago
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆123Apr 7, 2024Updated 2 years ago
- Secondary structure prediction of long non-coding RNA: review and experimental comparison of existing approaches, L.A. Bugnon, A.A. Edera…☆21Mar 17, 2024Updated 2 years ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆161Mar 22, 2026Updated 4 months ago
- Integrative Python library for RNA Secondary Structure Analysis☆20Mar 26, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- RNA Multiple Sequence Alignment☆53Jul 20, 2023Updated 3 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆106May 23, 2025Updated last year
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆18Jun 10, 2022Updated 4 years ago
- Contains code for Siamese Recurrent Neural Network with Self-Attention for Bioactivity Prediction☆10Mar 16, 2023Updated 3 years ago
- MCTS-RNA is a computational tool for solving RNA inverse folding problem with controlling the GC-content of the RNA sequence very precise…☆13Apr 3, 2017Updated 9 years ago
- PyTorch Implementation of Reptile☆22Jan 5, 2021Updated 5 years ago
- GCNfold: A novel lightweight model with valid extractors for RNA secondary structure prediction☆13Jul 23, 2023Updated 3 years ago
- A Snakefile to parallelize bwa.☆13Oct 25, 2013Updated 12 years ago
- the codes for paper "IIFDTI: predicting drug target interaction through interactive and independent features based on attention mechanism…☆11Apr 7, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 命例☆10Sep 27, 2018Updated 7 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆12Jan 15, 2021Updated 5 years ago
- Draw RNA secondary structures in python.☆54Jun 24, 2025Updated last year
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆13Jan 2, 2025Updated last year
- 智能组卷系统☆18May 4, 2026Updated 2 months ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆52Nov 23, 2023Updated 2 years ago
- the process of operating data types in the TCGA database☆19Dec 11, 2020Updated 5 years ago
- Code to go along with a manuscript: Bunis, et. al., Cell Reports, 2021.☆12May 3, 2023Updated 3 years ago
- Manipulate KEGG networks as NetworkX objects in in Python☆10Jan 21, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 6 years ago
- Simple scVI implementation☆13Jul 13, 2026Updated 2 weeks ago
- ☆14Jun 5, 2024Updated 2 years ago
- Repository for the UTN BA Data Science Course 2020☆15Jun 28, 2021Updated 5 years ago
- Implementation of Stochastic Depth Networks in Keras☆13Sep 10, 2016Updated 9 years ago
- MOMA: A Multi-task Attention Learning Algorithm for Multi-omics Data Interpretation and Classification☆19Apr 10, 2023Updated 3 years ago
- 抓取网易云音乐歌手歌词☆15Jan 18, 2018Updated 8 years ago
- ☆10Feb 3, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆11Sep 22, 2021Updated 4 years ago
- ☆18Apr 14, 2021Updated 5 years ago
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Aug 9, 2019Updated 6 years ago
- Supervised Dimensionality Reduction and Classification with Convolutional Autoencoders☆11Nov 4, 2022Updated 3 years ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆14Feb 7, 2024Updated 2 years ago
- ☆14Jul 9, 2023Updated 3 years ago
- scripts for parsing PDB, fasta, and GO☆16Oct 20, 2021Updated 4 years ago