Materials for "RNA secondary structure prediction with Convolutional Neural Networks" published in BMC Bioinformatics.
☆14May 3, 2023Updated 3 years ago
Alternatives and similar repositories for RNA-secondary-structure-prediction-using-CNN
Users that are interested in RNA-secondary-structure-prediction-using-CNN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SSR: A Unifed Framework for Prediction in Secondary Structure of RNA. 整合了LinearFold, E2Efold, MXfold2算法，包含数据集，欢迎一键使用。☆10Dec 31, 2021Updated 4 years ago
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆123Apr 7, 2024Updated 2 years ago
- Secondary structure prediction of long non-coding RNA: review and experimental comparison of existing approaches, L.A. Bugnon, A.A. Edera…☆21Mar 17, 2024Updated 2 years ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆162Mar 22, 2026Updated 4 months ago
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆37Apr 3, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Integrative Python library for RNA Secondary Structure Analysis☆20Mar 26, 2025Updated last year
- RNA Multiple Sequence Alignment☆53Jul 20, 2023Updated 3 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆106May 23, 2025Updated last year
- ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures☆15May 20, 2022Updated 4 years ago
- ☆12Feb 13, 2019Updated 7 years ago
- GCNfold: A novel lightweight model with valid extractors for RNA secondary structure prediction☆13Jul 23, 2023Updated 3 years ago
- MCTS-RNA is a computational tool for solving RNA inverse folding problem with controlling the GC-content of the RNA sequence very precise…☆13Apr 3, 2017Updated 9 years ago
- Neural Machine Translation project for NLP Fall 2016☆10Dec 20, 2016Updated 9 years ago
- PyTorch Implementation of Reptile☆22Jan 5, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- the codes for paper "IIFDTI: predicting drug target interaction through interactive and independent features based on attention mechanism…☆11Apr 7, 2022Updated 4 years ago
- 命例☆10Sep 27, 2018Updated 7 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆12Jan 15, 2021Updated 5 years ago
- Draw RNA secondary structures in python.☆54Jun 24, 2025Updated last year
- ☆16Sep 8, 2021Updated 4 years ago
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆13Jan 2, 2025Updated last year
- PyTorch implementation of OpenAI's REPTILE Algorithm☆26May 8, 2018Updated 8 years ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆52Nov 23, 2023Updated 2 years ago
- An extensible toolkit for DevOps and NoOps☆17Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- the process of operating data types in the TCGA database☆19Dec 11, 2020Updated 5 years ago
- Code to go along with a manuscript: Bunis, et. al., Cell Reports, 2021.☆12May 3, 2023Updated 3 years ago
- Manipulate KEGG networks as NetworkX objects in in Python☆10Jan 21, 2022Updated 4 years ago
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- 基于词典的正向最大匹配分词算法和基于词典的逆向最大匹配分词算法☆13Dec 12, 2017Updated 8 years ago
- 智能文本输入助手基于Linux 平台，C/C++语言实现。该项目是个一个用于对输入单词进行关联性分析，旨在为用户输入更好的查询建议的智能助手。实现了输入查询词，联想推荐出候选词，返回结果的整个输入助手的流程。☆19Nov 5, 2020Updated 5 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 6 years ago
- Simple scVI implementation☆13Updated this week
- ☆14Jun 5, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- data and code for paper "CCGIR: Information Retrieval-based Code Comment Generation Method for Smart Contracts", which accepted in KBS. 智…☆17Apr 24, 2022Updated 4 years ago
- MOMA: A Multi-task Attention Learning Algorithm for Multi-omics Data Interpretation and Classification☆19Apr 10, 2023Updated 3 years ago
- ☆10Feb 3, 2020Updated 6 years ago
- ☆11Sep 22, 2021Updated 4 years ago
- Pretty, simple, optionally interactive plots for bioinformatics analysis pipelines☆14Mar 1, 2023Updated 3 years ago
- ☆13Apr 1, 2023Updated 3 years ago
- Supervised Dimensionality Reduction and Classification with Convolutional Autoencoders☆11Nov 4, 2022Updated 3 years ago