VCCRI / VPOTLinks
VPOT - Variant Prioritisation Ordering Tool. VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR annotated VCF files.
☆19Updated 4 years ago
Alternatives and similar repositories for VPOT
Users that are interested in VPOT are comparing it to the libraries listed below
Sorting:
- Call regions of homozygosity and make tentative UPD calls☆12Updated 7 months ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- myVCF: a web-based platform for target and exome mutations data management☆20Updated 4 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated last month
- Clinical Variant Annotation Pipeline☆10Updated 5 years ago
- Rapid and accurate ancestry inference using SNVs.☆28Updated 5 months ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Updated 2 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- Aggregation and analyses of rare CNVs across diseases☆15Updated 3 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 11 months ago
- Variant catalogue pipeline☆26Updated 2 weeks ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- ☆29Updated 4 years ago
- ☆21Updated 3 years ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 5 months ago
- ☆33Updated 3 years ago
- Location of public benchmarking; primarily final results☆18Updated 11 months ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆29Updated 3 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated 2 months ago
- Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5☆19Updated last year
- ☆18Updated 3 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- ☆27Updated last year
- A Nextflow Genome-Wide Association Study (GWAS) Pipeline☆36Updated 7 months ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 2 weeks ago
- ☆38Updated last year