Faster FASTA and FASTQ file processing command line tool - parsing, sorting, deduplication, transliteration, filter, and stats
☆31Oct 8, 2026Updated 2 weeks ago
Alternatives and similar repositories for FasterFASTA
Users that are interested in FasterFASTA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- Link to this library and it will log all the LibC functions you are calling and how much time you are spending in them!☆22Jan 4, 2025Updated last year
- One pure-Rust binary that finds genes in phages, viruses, giant viruses, crassphages, bacteria, archaea, eukaryotes — and raw sequencing …☆36Oct 14, 2026Updated last week
- Fast, highly accurate, read-trimming for NGS data.☆26Updated this week
- bedpull - Pull the query sequence from bam or fasta references using a bed file☆16Sep 24, 2026Updated 3 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- rust tool to choose the best read alignment between haploids to a diploid reference genome☆21Oct 1, 2026Updated 3 weeks ago
- quick qc on long-read alignment files. Show read-length and depth distributions☆23Apr 24, 2026Updated 5 months ago
- Interactive demos of sequence algorithms☆26Updated this week
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 3 months ago
- A pure rust reimplementation of rapid-gzip by Maximilian Knespel and Holger Brunst☆21Aug 10, 2026Updated 2 months ago
- A fast, memory-efficient variant effect predictor written in Rust: a from-scratch reimplementation of the Ensembl Variant Effect Predicto…☆47Updated this week
- ☆18Oct 12, 2026Updated last week
- ☆28Jun 16, 2026Updated 4 months ago
- Homology-based ANI estimation at unprecedented scales🦀☆25Oct 4, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A SIMD-accelerated library to compute random minimizers☆49Oct 2, 2026Updated 3 weeks ago
- Exact biosequence alignment and folding on GPUs — Needleman-Wunsch, Smith-Waterman, Levenshtein, Zuker, and Sankoff with Gotoh adjustment…☆34Oct 5, 2026Updated 2 weeks ago
- A Rust-native bioinformatics pipeline engine with AI Companion☆24Updated this week
- An extensible and performant aligner and read mapper☆107Oct 14, 2026Updated last week
- A rust implementation of STAR☆90Oct 15, 2026Updated last week
- Optimizing bit-level Jaccard Index and Population Counts for large-scale quantized Vector Search via Harley-Seal CSA and Lookup Tables☆22May 18, 2025Updated last year
- Comparing performance-oriented string-processing libraries for substring search, multi-pattern matching, hashing, edit-distances, sketchi…☆160Oct 15, 2026Updated last week
- Blazingly fast, streaming duplicate detection for NGS data☆22Oct 5, 2026Updated 2 weeks ago
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Oct 14, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆47Dec 18, 2025Updated 10 months ago
- NCBI Taxonomy History Browser☆10May 7, 2026Updated 5 months ago
- Compressed, associative, and exact hash table for k-mers☆11Oct 15, 2026Updated last week
- Fast sequence distance estimates☆34Updated this week
- ☆19Aug 25, 2026Updated last month
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆45Aug 12, 2026Updated 2 months ago
- A method to locate variation clusters☆11Nov 27, 2025Updated 10 months ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆29Updated this week
- ☆29Aug 15, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Native Rust reimplementation of the bwa-mem2 short-read aligner (byte-identical target, GPU planned). Work in progress. Not the official …☆23Oct 11, 2026Updated last week
- Deep Learning Processing Library for Biological Data☆13Updated this week
- Mounts as file descriptors are useful☆13May 21, 2021Updated 5 years ago
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆31Oct 14, 2026Updated last week
- Tools to explore Minimum Decycling Sets (MDSs) of the de Bruijn graph☆12Sep 11, 2025Updated last year
- ☆12Aug 5, 2026Updated 2 months ago
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 3 years ago