Model-intelligent orchestration for CLI bioinformatics
ā23May 26, 2026Updated last month
Alternatives and similar repositories for oxo-call
Users that are interested in oxo-call are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- (Experimental) Yet Another bioinformatics workflow engine https://traitome.github.io/oxo-flow/documentation/ā15Updated this week
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 š£ā11Apr 28, 2023Updated 3 years ago
- Execute command line tool from Rā22Mar 17, 2026Updated 4 months ago
- Cancer circRNA identification pipeline with an ensemble approachā19May 18, 2026Updated 2 months ago
- Damage parameter estimation for ancient DNAā19Apr 8, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform ⢠AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Bizard: A Biomedical Visualization Atlas. https://openbiox.github.io/Bizard/ā66Jul 12, 2026Updated last week
- Scripts of population genomics analysisā36May 8, 2018Updated 8 years ago
- Plant small RNA target prediction toolā27Dec 19, 2016Updated 9 years ago
- Identifies duplicate reads. This tool locates and tags duplicate reads in a coordinate ordered SAM or BAM file.ā24Jan 21, 2026Updated 5 months ago
- A machine learning approach to alignment filteringā16Jun 18, 2026Updated last month
- Annotate 2D point clouds using overlay polygonsā15Jun 19, 2025Updated last year
- Pipelines for NGS, imputation, gwas, ...ā30Dec 18, 2019Updated 6 years ago
- Codes for the lettuce resequencing project in 2020ā31Jun 28, 2021Updated 5 years ago
- An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.ā19May 30, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer ⢠AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for detecting genomic island insertions in clades of microbes.ā19Sep 14, 2023Updated 2 years ago
- A mitogenome toolkit inspired by MitoZ, while being more effective, precise and flexible.ā21May 10, 2023Updated 3 years ago
- This is the script used for analysis the population data of alfalfaā11May 22, 2024Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomesā25May 2, 2018Updated 8 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysisā15Aug 27, 2023Updated 2 years ago
- Spatiotemporal Clustering and Inference of Omics Networks (SC-ION)ā12Oct 24, 2024Updated last year
- a set of SKILLS.md for doing bioinformatics with agents like claude codeā1,040Updated this week
- R package for visualising high-dimensional categorical dataā26Dec 11, 2025Updated 7 months ago
- ā21Jul 14, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer ⢠AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python library for identification and masking of low-complexity regions in nucleotide sequencesā13Updated this week
- Bioinformatics 101 tool for counting unique k-length substrings in DNAā33Feb 17, 2026Updated 5 months ago
- scripts and intermediate files used to annotate TEs in Jiao et al.ā34Apr 12, 2018Updated 8 years ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.ā10Apr 22, 2024Updated 2 years ago
- ā12May 24, 2022Updated 4 years ago
- ā33Jul 14, 2021Updated 5 years ago
- Repo with analysis code for the vascular atlas paperā10Nov 22, 2024Updated last year
- A pipeline for the identification of Compound Heterozygous Variantsā10Nov 10, 2022Updated 3 years ago
- CGView.js creates interactive circular and linear genome maps.ā47Jul 9, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer ⢠AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Documentation of Hiplot (ORG) visualization platform.ā28Mar 2, 2023Updated 3 years ago
- Lint Nextflow pipelines in Python.ā11Jan 23, 2025Updated last year
- This is code for running Orthofinder -> PAMLā13Jul 27, 2016Updated 9 years ago
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as Cā¦ā11May 28, 2021Updated 5 years ago
- Plant genome assembly and annotation pipeline using snakemakeā55May 14, 2025Updated last year
- ā14Jun 18, 2026Updated last month
- Educational Notes on Molecular Modelingā13Nov 19, 2020Updated 5 years ago