TileDB-Inc / tiledbsc
Single-cell data structures in TileDB
☆14Updated 6 months ago
Related projects: ⓘ
- Brings SingleCellExperiment objects to the tidyverse☆35Updated this week
- Clone of the Bioconductor repository for the basilisk package.☆27Updated last month
- R package for benchmarking single cell analysis methods☆29Updated 11 months ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 3 years ago
- the manifesto, workshops and tutorials of the tidy transcriptomics☆12Updated 4 months ago
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆13Updated 5 years ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆30Updated 2 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 6 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆36Updated 4 months ago
- Single-cell analysis with non-negative matrix factorization☆39Updated 5 months ago
- Peak-based selection of high quality cytometry data☆14Updated last year
- Variance stabilizing transformation for Gamma Poisson distributed data☆21Updated last year
- Gene-level general linear mixed model☆18Updated last year
- R API and htmlwidget for Vitessce☆34Updated last month
- Toolkit for QTL mapping and meta-analysis.☆16Updated 2 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆19Updated 2 months ago
- collections of tools for cytometry data analysis☆12Updated 4 years ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated 3 months ago
- ☆10Updated 6 years ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19Updated 5 years ago
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆10Updated 2 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 4 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 2 weeks ago
- Integrating zingeR with ZINB-WaVE weights☆23Updated 6 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 months ago
- ☆54Updated 2 months ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆26Updated last year
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- An analytics package for single cell data☆20Updated 2 years ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago