TileDB-Inc / tiledbsc

Related projects ⓘ

Alternatives and complementary repositories for tiledbsc

• LTLA / TileDBArray
  Clone of the Bioconductor repository for the TileDBArray package.
  ☆10Updated last month
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆29Updated last year
• corbinq / apex
  Toolkit for QTL mapping and meta-analysis.
  ☆16Updated 2 years ago
• stemangiola / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆35Updated 2 months ago
• stephaniehicks / scBatchPaper
  Code used for the single-cell RNA-Seq batch effects paper
  ☆10Updated 7 years ago
• tidyomics / tidyomicsBlog
  the manifesto, workshops and tutorials of the tidy transcriptomics
  ☆12Updated 6 months ago
• Bioconductor / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆27Updated 3 weeks ago
• gjhunt / dtangle
  Cell type deconvolution from high-throughput gene expression profiling experiments.
  ☆31Updated 3 years ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 4 years ago
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆42Updated 3 weeks ago
• stephaniehicks / spatialexperiment-analysis
  repo to explore spatial data in R/Bioconductor and Python
  ☆12Updated 4 years ago
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 2 years ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆43Updated last year
• statOmics / zinbwaveZinger
  Integrating zingeR with ZINB-WaVE weights
  ☆23Updated 6 years ago
• const-ae / transformGamPoi
  Variance stabilizing transformation for Gamma Poisson distributed data
  ☆21Updated last year
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆18Updated 2 months ago
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated 3 weeks ago
• anna-neufeld / countsplit
  ☆20Updated last year
• kstreet13 / scry
  Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
  ☆19Updated 4 months ago
• StoreyLab / superSeq
  Assessing the increase in power from increasing read depth in a given RNA-Seq study
  ☆13Updated 5 years ago
• SimoneTiberi / distinct
  distinct: a method for differential analyses via hierarchical permutation tests
  ☆11Updated 11 months ago
• hb-gitified / cellrangerRkit
  Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)
  ☆19Updated 5 years ago
• bioturing / signac
  An analytics package for single cell data
  ☆21Updated 2 years ago
• immunogenomics / singlecellmethods
  Collection of useful methods for single cell analysis
  ☆14Updated 2 months ago
• Simon-Coetzee / StatePaintR
  ☆10Updated 6 years ago
• nullranges / nullranges
  Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…
  ☆26Updated last year
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆44Updated 4 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• drighelli / SpatialExperiment
  ☆55Updated 4 months ago
• skinnider / dismay
  Calculation of distance metrics for matrices
  ☆25Updated 5 years ago