Scripts to preprocess mouse MRI/fMRI/dMRI
☆10May 22, 2024Updated last year
Alternatives and similar repositories for MouseMRIPrep
Users that are interested in MouseMRIPrep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A generally applicable whole-brain preprocessing toolbox for mice and rats☆12Jul 11, 2024Updated last year
- Mouse brain network analysis of rs-fMRI and DTI data using graph theory☆10Jan 16, 2026Updated 2 months ago
- Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo☆27Jan 20, 2024Updated 2 years ago
- Analyze brain surface/volume (gifti, cifti, nifti) in R and extract networks☆10Oct 4, 2022Updated 3 years ago
- Small Animal Magnetic Resonance Imaging via Python.☆43Mar 4, 2024Updated 2 years ago
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆36Feb 20, 2026Updated last month
- Generate a package-manager-friendly mouse brain atlases collection.☆22Aug 4, 2023Updated 2 years ago
- Tools for running psychology experiments in Matlab.☆10Jul 15, 2019Updated 6 years ago
- Procedure to create monkey brain surfaces and project results to it☆16Feb 14, 2025Updated last year
- The ANTsX Ecosystem for Mapping the Mouse Brain☆19Dec 2, 2025Updated 3 months ago
- Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI☆23Aug 20, 2021Updated 4 years ago
- Repository for the 2023 OHBM Hackathon☆16Oct 29, 2025Updated 4 months ago
- U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu☆18Nov 15, 2021Updated 4 years ago
- Preprocessing toolbox for rat rs-fMRI data☆12Mar 16, 2022Updated 4 years ago
- Perivascular-space Identification Network using a Generalisable Unet☆24Oct 30, 2025Updated 4 months ago
- Tools for MRI mouse brain morphometry☆32Jan 16, 2017Updated 9 years ago
- ⚡ Generate channel maps for Neuropixels probes that respect electrode-ADC wiring constraints! ⚡☆30Updated this week
- Conda environment for neuroimaging analysis in python, R, etc☆23May 20, 2021Updated 4 years ago
- ☆12Apr 10, 2019Updated 6 years ago
- This repo includes Midjourney prompt curation to use Midjourney better.☆13Feb 22, 2023Updated 3 years ago
- Automated Pipeline for EEG Artifact Reduction (APPEAR) Recorded during fMRI☆15Jun 11, 2023Updated 2 years ago
- This repository will host scripts used to map structural and functional brain connectivity matrices for the UK biobank dataset.☆73Dec 3, 2025Updated 3 months ago
- This project provides the codes for the nested-spectral partition (NSP) method based on eigenmodes of human brain functional networks, an…☆17Feb 20, 2023Updated 3 years ago
- A Matlab toolbox for examining the quality of structural (SNR) and functional (tSNR, SFNR) MRI☆13Apr 1, 2020Updated 5 years ago
- Toolbox for structural and functional brain connectivity reconstruction.☆18Oct 21, 2024Updated last year
- Repository of code, data and CAD files associated with Luo*, Bondy* et al (2020). "An approach for long-term, multi-probe Neuropixels rec…☆11Jul 1, 2025Updated 8 months ago
- A series of simulation codes used to emulate quantum-like networks in the simulation of emergent adaptive behavior, such as network sync…☆13Mar 12, 2026Updated last week
- 天池肺结节检测与分类☆15Jun 4, 2019Updated 6 years ago
- Code for paper NeuroGen: activation optimized image synthesis for discovery neuroscience.☆11Sep 24, 2023Updated 2 years ago
- Index and overview of neuroimaging datasets for visual perception reconstruction.☆72Mar 13, 2026Updated last week
- ☆13Feb 3, 2020Updated 6 years ago
- A neural network-based ap proach for optimizing the lung cancer nodule detection and lung cancer stage detection based on pre-processing,…☆12Sep 12, 2019Updated 6 years ago
- Source code for The Art of Coding: The Language of Drawing, Graphics, and Animation☆11Mar 30, 2020Updated 5 years ago
- ☆12Jan 5, 2025Updated last year
- Plugin VideoPlayer for Cordova 3.0☆27Nov 4, 2013Updated 12 years ago
- catchaMouse16: CAnonical Time-series CHaracteristics for Mouse fMRI☆19Jul 15, 2025Updated 8 months ago
- atlasBREX: Automated averaged template-derived brain extraction in animal MRI☆17Jan 15, 2024Updated 2 years ago
- ☆16Jul 20, 2021Updated 4 years ago
- 3D Slicer extension to create tube or closed surface model from markup fiducials☆15Aug 27, 2023Updated 2 years ago