Fast, accurate construction of multiple sequence alignments from protein language embeddings
☆19Jun 16, 2026Updated last month
Alternatives and similar repositories for ARIES
Users that are interested in ARIES are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Infering ancestral synteny with hierarchical orthologous groups☆38Jun 26, 2026Updated 2 weeks ago
- Plot multiple sequence alignment (MSA)☆17Apr 21, 2026Updated 2 months ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 8 months ago
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Apr 16, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 7 years ago
- ☆19May 10, 2023Updated 3 years ago
- Fast indexing and search of discontinuous motifs in protein structures☆197Updated this week
- Learning and Aligning Large Protein Families with support of protein language models.☆32Updated this week
- Fast implementation of the neighbour-joining phylogenetic inference method☆23May 23, 2020Updated 6 years ago
- A predictor of enzyme optimal temperature☆18Mar 13, 2025Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- ☆11Apr 20, 2018Updated 8 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆57Jun 17, 2026Updated 3 weeks ago
- PyTorch Implementation of CLEAN-Contact: Contrastive Learning-enabled Enzyme Functional Annotation Prediction with Structural Inference☆11May 29, 2024Updated 2 years ago
- SV genotyper for long reads with a variation graph☆16Apr 15, 2026Updated 3 months ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆21Apr 9, 2025Updated last year
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆35Jul 2, 2026Updated 2 weeks ago
- Web based viewer for small to medium GFA format files, similar to Bandage☆13Jun 19, 2026Updated 3 weeks ago
- ☆17Oct 7, 2024Updated last year
- A simple script to calculate q20/q30 percentages of a fastq file (can be gzipped)☆14Aug 31, 2016Updated 9 years ago
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆18May 21, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Nextflow pipeline for running synteny analysis.☆20Jun 25, 2026Updated 3 weeks ago
- LIVIA (Local Interaction VIsualization and Analysis) — Analyze and visualize protein interaction interfaces from structure predictions. B…☆22Updated this week
- Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.☆17Jun 4, 2026Updated last month
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 2 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Repository for general metagenomics Nextflow pipeline☆27Mar 23, 2026Updated 3 months ago
- Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.☆17Jun 29, 2026Updated 2 weeks ago
- Catalogue of pairwise alignment algorithms and benchmarks☆26Jan 6, 2026Updated 6 months ago
- Accelerated protein structural generation flow-matching model based on Apple's SimpleFold.☆17May 6, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆12Mar 11, 2020Updated 6 years ago
- AI-powered macromolecular refinement☆48Apr 26, 2026Updated 2 months ago
- Scanning and visualization for variable gap motifs.☆18Aug 6, 2024Updated last year
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 11 months ago
- ☆11Aug 10, 2023Updated 2 years ago
- FASSO: Functional Annotations using Sequence and Structure Orthology☆10Jan 17, 2023Updated 3 years ago