Very fast greedy diffeomorphic registration code
☆83Feb 12, 2026Updated 2 weeks ago
Alternatives and similar repositories for greedy
Users that are interested in greedy are comparing it to the libraries listed below
Sorting:
- Convert3D tool☆41Feb 19, 2026Updated last week
- FALCON is a Python-based software application designed to facilitate PET motion correction, both for head and total-body scans. Our pro…☆48Dec 2, 2025Updated 3 months ago
- A suite of tools for medical image processing focused on brain analysis☆126Nov 11, 2025Updated 3 months ago
- ITK-SNAP medical image segmentation tool☆422Oct 27, 2025Updated 4 months ago
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utili…☆176Nov 21, 2025Updated 3 months ago
- Official repository of the Ibis Neuronav platform☆47Oct 24, 2025Updated 4 months ago
- Convert 3D NIfTI images (and other formats supported by ITK) to DICOM 2D series☆88Nov 16, 2016Updated 9 years ago
- Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registration☆88Feb 24, 2026Updated last week
- Advanced Normalization Tools (ANTs)☆1,428Updated this week
- Pre-trained models and utilities for deep learning on medical images in Python (Keras/TensorFlow)☆248Updated this week
- Neuroimaging in PyTorch☆100Jan 21, 2026Updated last month
- Loading and saving of image data.☆10Feb 9, 2024Updated 2 years ago
- A 3D lesion segmentation method on whole-body PET images including automated quality control.☆12Jun 20, 2024Updated last year
- Semi-Supervised Unpaired Multi-Modal Learning for Label-Efficient Medical Image Segmentation☆10Jun 29, 2021Updated 4 years ago
- ☆10May 26, 2021Updated 4 years ago
- Dynamic positron emission tomography (PET) analysis☆14Jul 24, 2025Updated 7 months ago
- Don't mix, match! Simple utilities for improved registration of Histopathology Whole Slide Images.☆11Oct 11, 2020Updated 5 years ago
- ITK IO for images stored in OME-Zarr format.☆11Sep 4, 2025Updated 6 months ago
- TREX: A Framework for Extraction of CT Radiomics Features☆11Feb 6, 2018Updated 8 years ago
- dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC☆1,124Nov 4, 2025Updated 4 months ago
- Python wrapper around MATLAB and SPM12☆10Updated this week
- Framework for registration of sequential digitized histology slices☆28Mar 24, 2022Updated 3 years ago
- Official elastix repository☆561Updated this week
- example code for TBME Publication "Model-based Sparse-to-dense Image Registration for Realtime Respiratory Motion Estimation in Image-gui…☆13Aug 20, 2018Updated 7 years ago
- ☆18Dec 9, 2025Updated 2 months ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Brain image registration package☆31Jun 21, 2016Updated 9 years ago
- nii2dcm: NIfTI to DICOM creation with Python☆87May 6, 2025Updated 9 months ago
- A single NIfTI image saved with all 48 spatial rotation permutations☆30Jul 7, 2021Updated 4 years ago
- MICCAI 2017 Paper - Optimal Transport for Diffeomorphic Registration☆56Apr 15, 2019Updated 6 years ago
- Simple bash script that downloads and installs ANTs in a unix environment☆13Jan 28, 2025Updated last year
- Repository to train Latent Diffusion Models on Brain data (BIOBANK) using MONAI Generative Models☆16Jul 2, 2023Updated 2 years ago
- A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.☆833Updated this week
- Open-source part of the medInria software☆98Dec 4, 2025Updated 3 months ago
- Tools for accessing open data sets published by the Allen Institute for Brain Sciences☆15Jun 29, 2021Updated 4 years ago
- Simple Scripted Module to batch process patients in 3D Slicer☆16Jun 26, 2025Updated 8 months ago
- #The demo of Cycle-Shape-GAN using chainer☆10Jun 7, 2018Updated 7 years ago
- A collection of tools and algorithms for image guided systems☆20Jul 22, 2025Updated 7 months ago
- MS thesis @Harvard: Deep Learning optimization and data augmentation methods for WMH quantification☆18Jun 1, 2024Updated last year