This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utilities
☆187Jul 8, 2026Updated this week
Alternatives and similar repositories for niftyreg
Users that are interested in niftyreg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- highest ranked algorithm of Learn2Reg requires little to no training and runs within seconds☆87Nov 17, 2025Updated 7 months ago
- Official elastix repository☆579Jun 24, 2026Updated 2 weeks ago
- Unsupervised Learning for Image Registration☆2,740Jun 15, 2026Updated 3 weeks ago
- ☆31Mar 8, 2022Updated 4 years ago
- new and more efficient version for 3D discrete deformable registration, reaching the highest accuracy in several benchmarks☆133Sep 9, 2025Updated 10 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Contrast-agnostic segmentation of MRI scans☆564Jul 17, 2024Updated last year
- Advanced Normalization Tools (ANTs)☆1,483Updated this week
- Neuroimaging in PyTorch☆100Mar 25, 2026Updated 3 months ago
- Very fast greedy diffeomorphic registration code☆87Apr 16, 2026Updated 2 months ago
- uniGradICON: A Foundation Model for Medical Image Registration (MICCAI 2024)☆227May 4, 2026Updated 2 months ago
- an image registration/augmentation/segmentation package☆176Jan 8, 2023Updated 3 years ago
- Medical image registration using deep learning☆626Dec 15, 2022Updated 3 years ago
- A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.☆877Jun 17, 2026Updated 3 weeks ago
- Large Deformation Diffeomorphic Image Registration with Laplacian Pyramid Networks☆144Jul 20, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Image Registration☆294Nov 14, 2019Updated 6 years ago
- Mirror of NifTK on cmiclab, providing 3 main GUIs and about 150+ command line apps.☆23Jul 27, 2019Updated 6 years ago
- Multi-lingual medical image registration library☆538Jun 15, 2023Updated 3 years ago
- Efficient dense deformable image registration☆30Jun 28, 2023Updated 3 years ago
- The accompanying code of "Accelerating B-spline Interpolation on GPUs: Application to Medical Image Registration"☆14Apr 11, 2020Updated 6 years ago
- One Shot Deformable Medical Image Registration☆40May 8, 2020Updated 6 years ago
- Conditional Deformable Image Registration with Convolutional Neural Network☆87May 21, 2024Updated 2 years ago
- Image registration laboratory for 2D and 3D image data☆433Oct 8, 2020Updated 5 years ago
- egs_brachy is an application for doing Monte Carlo brachytherapy simulations based on EGSnrc/egs++.☆25Jun 30, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code for ISBI 2024 paper "Fully Differentiable Correlation-driven 2D/3D Registration for X-Ray to CT Image Fusion"☆10Aug 26, 2024Updated last year
- Image registration using pytorch☆184Jul 25, 2024Updated last year
- Dataset of CT image pairs with landmarks for deformable image registration (DIR) quality assurance.☆15Jul 31, 2024Updated last year
- Inverse-Consistent Deep Networks for Unsupervised Deformable Image Registration☆56Dec 8, 2020Updated 5 years ago
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆279Updated this week
- Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI☆40Nov 28, 2025Updated 7 months ago
- ☆26Dec 1, 2025Updated 7 months ago
- Tool for robust segmentation of >100 important anatomical structures in CT and MR images☆2,852Updated this week
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆80Jun 26, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆165Jun 1, 2026Updated last month
- ☆10Mar 1, 2021Updated 5 years ago
- A library for performing image registration using deep learning, regularized by inverse consistency☆63Jul 1, 2026Updated last week
- Multi-modal Image Registration And Connectivity anaLysis☆49Jun 17, 2026Updated 3 weeks ago
- Official implementation of Recurrence with Correlation Network for Medical Image Registration☆10Mar 4, 2026Updated 4 months ago
- Tools to automate simple manipulations and measurements of medical images and segmentations in nifti format.☆23May 19, 2025Updated last year
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆39Nov 24, 2023Updated 2 years ago