NicoKiaru / LimeSeg
Point based 3D segmentation plugin for FIJI
☆9Updated last year
Alternatives and similar repositories for LimeSeg:
Users that are interested in LimeSeg are comparing it to the libraries listed below
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆13Updated 2 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 5 months ago
- ☆13Updated 5 years ago
- Things we use regularly☆29Updated 7 months ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 months ago
- Optimize image processing workflows in napari☆17Updated 2 years ago
- Dataset EXploration & Processing☆32Updated last year
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 4 months ago
- GPU Deconvolution Library with C and Matlab API for nVidia GPUs☆21Updated 6 years ago
- Create movies from series of key-frames in napari.☆37Updated 3 years ago
- dask empowered fast4dreg☆11Updated 4 months ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 3 weeks ago
- ☆12Updated last year
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆25Updated 4 years ago
- Lattice light-sheet post-processing utility.☆28Updated 2 weeks ago
- Little OBjects Segmentation and Tracking EnviRonment☆9Updated 4 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆64Updated 2 weeks ago
- Multi-Object Tracker using Integer Linear Equations☆30Updated 3 weeks ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆41Updated 2 weeks ago
- Python module for registering and fusing multi-view microscopy data☆23Updated last month
- Process images using SimpleITK in napari☆20Updated 6 months ago
- Process and analyze surfaces using vedo in napari.☆23Updated 11 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- How to use Aligning Big Brains and Atlases with Python☆15Updated last year
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆16Updated last year
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated 2 weeks ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 3 years ago
- A napari plugin to analysis point spread functions.☆12Updated 3 weeks ago
- ImageJ convenience layer for N5☆16Updated 2 weeks ago