Alternatives and similar repositories for Compute4COVID

Users that are interested in Compute4COVID are comparing it to the libraries listed below

• kundajelab / cs273b
  CS273B Deep Learning for Genomics Course Materials
  ☆34Updated 5 years ago
• wisdal / diagnose-and-explain
  An attention-based CNN-LSTM model that generates and explains Chest X-ray diagnostics using Natural Language
  ☆23Updated 5 years ago
• Google-Health / genomics-research
  ☆151Updated 11 months ago
• broadinstitute / dsde-deep-learning
  DSDE Deep Learning Club
  ☆40Updated 6 years ago
• kuleshov / gwaskb
  Machine-curated database of genetic disease and genome-wide association studies
  ☆57Updated 6 years ago
• kundajelab / seqdataloader
  Sequence data label generation and ingestion into deep learning models
  ☆11Updated 4 years ago
• p-koo / deepomics
  deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis
  ☆22Updated 2 years ago
• kipoi / models
  Model zoo for genomics
  ☆173Updated this week
• recursionpharma / rxrx1-utils
  Starter code for the CellSignal NeurIPS 2019 competition.
  ☆45Updated 6 months ago
• theislab / deepflow
  This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.
  ☆33Updated 7 years ago
• budach / pysster
  pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks
  ☆86Updated 6 years ago
• NVIDIA-Genomics-Research / GenomeWorks
  SDK for GPU accelerated genome assembly and analysis
  ☆299Updated last year
• aehrc / VariantSpark
  machine learning for genomic variants
  ☆147Updated last week
• modelhub-ai / modelhub
  A collection of deep learning models with a unified API.
  ☆68Updated 3 years ago
• vandijklab / scGAT
  Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…
  ☆18Updated 5 years ago
• DasLab / KaggleOpenVaccine
  ☆56Updated last year
• QData / DeepChrome
  Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications
  ☆63Updated 4 years ago
• HallLab / pandas-genomics
  Pandas ExtensionDtypes for dealing with genomics data
  ☆47Updated 6 months ago
• NVIDIA-Genomics-Research / racon-gpu
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
  ☆17Updated 5 years ago
• kipoi / kipoi
  Kipoi's model zoo API
  ☆239Updated last year
• jmschrei / rambutan
  Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.
  ☆21Updated 7 years ago
• recursionpharma / rxrx-datasets
  READMEs for RxRx.ai datasets
  ☆27Updated 6 months ago
• alexxijielu / paired_cell_inpainting
  Self-supervised learning for microscopy images
  ☆55Updated 6 years ago
• AllenCellModeling / pytorch_integrated_cell
  Integrated Cell project implemented in pytorch
  ☆44Updated 2 months ago
• BIMSBbioinfo / janggu
  Deep learning infrastructure for genomics
  ☆257Updated 4 years ago
• NikolayOskolkov / DeepLearningDataIntegration
  Here I show how to use Deep Learning for biological and biomedical Data Integration.
  ☆11Updated 5 years ago
• NVIDIA-Genomics-Research / AtacWorks
  Deep learning based processing of Atac-seq data
  ☆131Updated 2 years ago
• hetio / hetnetpy
  Hetnets in Python (relocated from dhimmel/hetio)
  ☆99Updated 3 months ago
• lrgr / multifactorial-immune-response
  Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features
  ☆16Updated 7 years ago
• eternagame / EternaBrain
  Deep learning to solve RNA design puzzles
  ☆19Updated 10 months ago