danczakre / Meta-Metabolome_Ecology
This repository contains the generalized scripts necessary to perform the ecological analyses detailed within the manuscript titled, "Unification of Environmental Metabolomics with Metacommunity Ecology"
☆15Updated 4 years ago
Alternatives and similar repositories for Meta-Metabolome_Ecology:
Users that are interested in Meta-Metabolome_Ecology are comparing it to the libraries listed below
- This contains all the files and scripts necessary to participate in the FTICR-MS data analysis demonstration at the SBR SFA Community Wor…☆17Updated 4 years ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆47Updated 3 years ago
- ☆20Updated 5 years ago
- Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México☆21Updated 3 months ago
- Integrated Network Analysis Pipeline☆15Updated 3 months ago
- Best-matched internal standard normalization for metabolomics☆9Updated 7 years ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆74Updated last month
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆31Updated 2 months ago
- Statistics and visualization for amplicon data☆70Updated last year
- ☆22Updated 6 years ago
- Various functions for analysis of microbial community data☆43Updated 2 years ago
- ☆22Updated 2 years ago
- This is an R package for element cycle analysis using metagenomic data.☆36Updated 4 months ago
- Utilities for community ecology analysis☆18Updated 4 years ago
- Normalized Stochasticity Ratio in community assembly☆24Updated 5 months ago
- mapping files for MetaCyc pathway☆12Updated 5 years ago
- ☆36Updated last year
- Compare microbial co-occurrence networks based on the trans_network class of microeco package☆10Updated last month
- Transform files to the microtable object with microeco package☆25Updated 3 months ago
- Microbial co-occurrence network inferred from Earth Microbiome Project☆25Updated 4 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- Repo for a Microbiome Protocol☆10Updated 6 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆29Updated 7 years ago
- ☆12Updated 3 years ago
- Data and scripts for amplicon pipeline☆25Updated 6 years ago
- SourceTracker2☆70Updated 8 months ago
- ☆71Updated last year
- ☆13Updated 3 years ago
- FUNGuild: parsing OTUs into functional guilds☆113Updated 11 months ago