danczakre / Meta-Metabolome_Ecology
This repository contains the generalized scripts necessary to perform the ecological analyses detailed within the manuscript titled, "Unification of Environmental Metabolomics with Metacommunity Ecology"
☆16Updated 4 years ago
Alternatives and similar repositories for Meta-Metabolome_Ecology
Users that are interested in Meta-Metabolome_Ecology are comparing it to the libraries listed below
Sorting:
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆48Updated 3 years ago
- This contains all the files and scripts necessary to participate in the FTICR-MS data analysis demonstration at the SBR SFA Community Wor…☆17Updated 4 years ago
- ☆21Updated 5 years ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆74Updated 3 months ago
- Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México☆22Updated 3 weeks ago
- Integrated Network Analysis Pipeline☆15Updated 4 months ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- ☆23Updated 6 years ago
- ☆13Updated 3 years ago
- This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.☆10Updated 5 months ago
- This is an R package for element cycle analysis using metagenomic data.☆36Updated 5 months ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆31Updated 3 months ago
- ☆36Updated last month
- Normalized Stochasticity Ratio in community assembly☆24Updated 6 months ago
- Best-matched internal standard normalization for metabolomics☆9Updated 7 years ago
- Various functions for analysis of microbial community data☆44Updated 2 years ago
- Microbial co-occurrence network inferred from Earth Microbiome Project☆25Updated 5 years ago
- Microbial ecological network visualization clustering☆111Updated 2 months ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆44Updated 6 months ago
- dada2 formatted nifH database☆11Updated last year
- FUNGuild: parsing OTUs into functional guilds☆117Updated last year
- Statistics and visualization for amplicon data☆70Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- Utilities for community ecology analysis☆18Updated 4 years ago
- Scripts for stat and plot figures in rice microbiome paper☆19Updated 6 years ago
- R and python scripts for correlation-based network analysis☆60Updated 5 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆29Updated 7 years ago
- phyloseq R☆11Updated 5 years ago
- The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.☆27Updated 2 years ago
- Network construction, analysis, and comparison for microbial compositional data☆165Updated last month