MIDRC / Stanford_Penn_MIDRC_Deidentifier
A deidentifier / deidentification pipeline developed by Stanford and Penn as part of the MIDRC organization.
☆84Updated 10 months ago
Alternatives and similar repositories for Stanford_Penn_MIDRC_Deidentifier:
Users that are interested in Stanford_Penn_MIDRC_Deidentifier are comparing it to the libraries listed below
- all scripts used in gatortron project☆116Updated last year
- Almanac: Retrieval-Augmented Language Models for Clinical Medicine☆31Updated last year
- Clinical text summarization by adapting large language models☆141Updated 8 months ago
- ☆29Updated 3 years ago
- General tutorials for the setup and use of MedCAT.☆37Updated 3 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆59Updated last year
- Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"☆105Updated 8 months ago
- Self-verification for LLMs.☆64Updated last year
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆44Updated last year
- Expert-Curated Oncology Reports to Advance Language Model Inference☆27Updated last year
- Robust de-identification of medical notes using transformer architectures☆52Updated 2 years ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆76Updated 6 months ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated 11 months ago
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆94Updated last year
- Winners of the SNOMED CT Entity Linking Challenge☆33Updated last year
- ☆42Updated last year
- ☆59Updated last year
- PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…☆66Updated last year
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆37Updated last year
- Sentence tokenizer for clinical/medical text.☆26Updated 10 months ago
- PLM-ICD: Automatic ICD Coding with Pretrained Language Models☆66Updated last year
- A python package for removing duplicate text in clinical notes or other documents☆36Updated 4 years ago
- The project was to build and release the first publicly available code evidence dataset called MDACE on a subset of the MIMIC-III clinica…☆28Updated last year
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)☆162Updated 2 months ago
- Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.☆66Updated 3 weeks ago
- python library for graphical and continuous representations of ICD9 and ICD10 codes☆38Updated 3 months ago
- Python Radiology Text Analysis System☆14Updated last year
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆80Updated last week
- Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration☆94Updated 8 months ago
- Medical reasoning using large language models☆86Updated last year